- s -

• safe_allocate() : dvector , ivector
• safe_choleski_solver() : safe_choleski_solver
• safe_deallocate() : dvector , ivector
• save() : initial_params , dfsdmat , initial_params
• save_adpool_pointer() : df1b2variable
• save_all() : initial_params
• save_arrays() : gradient_structure
• save_d3_array_position() : d3_array , DF_FILE
• save_d3_array_value() : d3_array , DF_FILE
• save_dependent_variable_position() : gradient_structure
• save_dmatrix_derivatives() : dmatrix , banded_symmetric_dmatrix , banded_lower_triangular_dmatrix
• save_dmatrix_derivatives_na() : dmatrix
• save_dmatrix_position() : dmatrix , banded_symmetric_dmatrix , banded_lower_triangular_dmatrix , DF_FILE
• save_dmatrix_value() : dmatrix , banded_symmetric_dmatrix , banded_lower_triangular_dmatrix , DF_FILE
• save_double_value() : DF_FILE
• save_dvar_matrix_position() : banded_lower_triangular_dvar_matrix , DF_FILE , dvar_matrix , banded_symmetric_dvar_matrix
• save_dvar_matrix_value() : dvar_matrix , banded_symmetric_dvar_matrix , banded_lower_triangular_dvar_matrix , DF_FILE
• save_dvar_vector_position() : dvar_vector , DF_FILE
• save_dvar_vector_value() : dvar_vector , DF_FILE
• save_dvector_derivatives() : dvector
• save_dvector_derivatives_na() : dvector
• save_dvector_position() : dvector , DF_FILE
• save_dvector_value() : dvector , DF_FILE
• save_end() : test_smartlist , fixed_smartlist , fixed_smartlist2
• save_imatrix_position() : DF_FILE , imatrix
• save_imatrix_value() : DF_FILE , imatrix
• save_int_value() : DF_FILE
• save_ivector_position() : DF_FILE , ivector
• save_ivector_value() : DF_FILE , ivector
• save_lmatrix_position() : lmatrix
• save_lmatrix_value() : lmatrix
• save_pointer_value() : DF_FILE
• save_prevariable_position() : prevariable , DF_FILE
• save_prevariable_value() : prevariable , DF_FILE
• save_value() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_matrix , param_init_d3array
• save_variables() : dlist , gradient_structure
• save_varsptr() : initial_df1b2params
• saveposition() : smartlist , test_smartlist , fixed_smartlist , fixed_smartlist2
• sd_routine() : function_minimizer
• sd_scale() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number , df1b2_init_bounded_number , df1b2_init_bounded_vector , df1b2_init_bounded_matrix
• sd_vscale() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array
• sdmatrix() : sdmatrix
• segment() : tiny_vec< Type, n >
• send_all_to_slaves() : pvm_params
• send_to_slaves() : pvm_params , pvm_number , pvm_int
• set() : gradient_structure , adjson::json
• set_active_flag() : initial_params
• set_active_only_random_effects() : initial_params
• set_active_random_effects() : initial_params
• set_activeflags() : shareinfo
• set_all_simulation_bounds() : initial_params
• set_ARRAY_MEMBLOCK_SIZE() : gradient_structure
• set_backword() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_blocksize() : df1b2variable
• set_bmap() : shareinfo
• set_CMPDIF_BUFFER_SIZE() : gradient_structure
• set_default_hessian_type() : laplace_approximation_calculator
• set_defaults() : fmm_control
• set_dependent_variables() : stddev_params , param_stddev_vector , param_stddev_number , param_stddev_matrix
• set_eof_bit() : cifstream
• set_forward() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_gbuffer_pointers() : grad_stack
• set_gradient_stack() : grad_stack
• set_gradient_stack0() : grad_stack
• set_gradient_stack1() : grad_stack
• set_gradient_stack2() : grad_stack
• set_gradient_stack4() : grad_stack
• set_GRADSTACK_BUFFER_BYTES() : gradient_structure
• set_GRADSTACK_BUFFER_SIZE() : gradient_structure
• set_ignore_eof() : cifstream
• set_inactive_flag() : initial_params
• set_inactive_only_random_effects() : initial_params
• set_inactive_random_effects() : initial_params
• set_index() : funnel_init_var , funnel_init_df1b2variable , funnel_init_bounded_df1b2vector , funnel_init_df1b2vector , funnel_init_df1b2matrix , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number
• set_initial_simplex() : function_minimizer
• set_initial_value() : initial_params , param_init_vector_vector , param_init_bounded_vector_vector , param_init_matrix_vector , param_init_bounded_matrix_vector , param_init_number_vector , param_init_bounded_number_vector
• set_invflags() : shareinfo
• set_MAX_DLINKS() : gradient_structure
• set_MAX_NVAR_OFFSET() : gradient_structure
• set_maxb() : param_init_bounded_vector , param_init_bounded_number , param_init_bounded_matrix
• set_maxder() : df1b2variable
• set_minb() : param_init_bounded_vector , param_init_bounded_number , param_init_bounded_matrix
• set_minder() : df1b2variable
• set_multinomial_weights() : function_minimizer
• set_NO_DERIVATIVES() : gradient_structure
• set_no_derivatives() : df1b2_gradlist
• set_NO_SAVE_VARIABLES_VALUES() : gradient_structure
• set_noreadflag() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_NUM_DEPENDENT_VARIABLES() : gradient_structure
• set_NUM_RETURN_ARRAYS() : gradient_structure
• set_nvar() : df1b2variable
• set_old_style_flag() : style_flag_class , normal_quadratic_prior , normal_df1b2quadratic_prior , quadratic_re_penalty , df1b2quadratic_re_penalty , constant_quadratic_re_penalty , constant_df1b2quadratic_re_penalty
• set_only_random_effects_active() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_only_random_effects_inactive() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_original_shareflags() : shareinfo
• set_phase_start() : initial_params , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number
• set_random_effects_active() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_random_effects_inactive() : initial_params , random_effects_number , random_effects_bounded_number , random_effects_vector , random_effects_bounded_vector , random_effects_matrix , random_effects_bounded_matrix
• set_recend() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_RETURN_ARRAYS_SIZE() : gradient_structure
• set_reverse() : test_smartlist , fixed_smartlist , fixed_smartlist2
• set_runtime() : function_minimizer
• set_runtime_crit() : function_minimizer
• set_runtime_maxfn() : function_minimizer
• set_scalefactor() : param_init_vector_vector , param_init_bounded_vector_vector , param_init_matrix_vector , param_init_bounded_matrix_vector , param_init_number_vector , param_init_bounded_number_vector , param_init_bounded_number_matrix , initial_df1b2params , param_init_bounded_number_vector , param_init_bounded_matrix_vector , initial_params
• set_shareflags() : shareinfo
• set_simulation_bounds() : initial_params , param_init_vector , param_init_bounded_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array
• set_size() : dfpool , adpool
• set_stepnumber() : likeprof_params
• set_stepsize() : likeprof_params
• set_u_dot() : laplace_approximation_calculator , init_df1b2variable
• set_use_eof() : cifstream
• set_USE_FOR_HESSIAN() : gradient_structure
• set_value() : df1b2_init_number , initial_params , param_init_vector , param_init_bounded_vector , param_init_bounded_dev_vector , param_init_number , param_init_bounded_number , param_init_matrix , param_init_d3array , funnel_init_var , funnel_init_df1b2variable , funnel_init_bounded_df1b2vector , funnel_init_df1b2vector , funnel_init_df1b2matrix , init_df1b2vector , initial_df1b2params , df1b2_init_vector , df1b2_init_matrix , df1b2_init_number , df1b2_init_bounded_number , df1b2_init_bounded_vector , random_effects_bounded_vector_info , re_df1b2_init_bounded_vector , df1b2_init_bounded_matrix , df1b2_init_bounded_dev_vector , df1b2_init_bounded_vector , df1b2_init_vector , funnel_init_df1b2vector , funnel_init_df1b2variable , param_init_bounded_matrix
• set_value_inv() : param_init_vector , param_init_bounded_vector , param_init_number , param_init_matrix , param_init_bounded_matrix , param_init_d3array , param_init_bounded_number , initial_params
• set_yes_derivatives() : df1b2_gradlist
• set_YES_DERIVATIVES() : gradient_structure
• set_YES_SAVE_VARIABLES_VALUES() : gradient_structure
• setAccuracy() : gauss_kronrod::Integral< Integrand >
• setBounds() : gauss_kronrod::Integral< Integrand >
• setid() : tiny_ad::variable< 1, nvar, Double > , tiny_ad::variable< order, nvar, Double >
• setindex() : stddev_params , param_stddev_number
• setshare() : param_init_d3array , param_init_vector , initial_params , param_init_matrix
• setup_quadprior_calcs() : function_minimizer
• setWorkspace() : gauss_kronrod::Integral< Integrand >
• setZero() : tiny_vec< Type, n >
• sgibbs_mcmc_routine() : function_minimizer
• shallow_copy() : d6_array , d7_array , d5_array , d4_array , dmatrix , dvar_matrix , dvar3_array , dvector , dvar_vector , d3_array , dvar4_array , i5_array , dvar5_array , dvar7_array , imatrix , ivector , i3_array , i4_array , dvar6_array
• shared_set_value() : param_init_bounded_matrix , param_init_d3array , initial_params , param_init_vector , param_init_matrix
• shared_set_value_inv() : initial_params , param_init_matrix , param_init_d3array , param_init_bounded_matrix , param_init_vector
• shared_size_count() : param_init_d3array , initial_params , param_init_vector , param_init_matrix
• shareinfo() : shareinfo
• shift() : lvector , dvector , dvar_vector , ptr_vector , banded_lower_triangular_dmatrix , vector_shapex , df1b2vector , ivector , banded_symmetric_dmatrix , vector_shape
• shmc_mcmc_routine() : function_minimizer
• signature() : cifstream
• sing_val_decomp() : sing_val_decomp
• size() : d6_array , df1b2vector , df1b23array , d5_array , i5_array , dvar6_array , adstring_array , tiny_vec< Type, n > , adstring_shape , i4_array , dvector , dfsdmat , i5_array , lvector , adstring , dvar_vector , d7_array , ptr_vector , dvar7_array , df1b2matrix , i4_array , ivector , dvar5_array
• size_count() : param_likeprof_number , param_stddev_matrix , param_stddev_vector , param_init_vector , param_init_d3array , param_stddev_number , param_init_number , param_init_bounded_vector , param_init_matrix , initial_params , stddev_params
• slicemax() : dvar3_array , i5_array , dvar4_array , i3_array , d3_array , i4_array , i5_array , dvar4_array , d4_array , i4_array
• slicemin() : i5_array , i3_array , d4_array , dvar4_array , d3_array , i4_array , i5_array , d4_array , dvar4_array , dvar3_array , i4_array
• slicesize() : i4_array , i3_array , dvar4_array , i4_array , i5_array , d4_array , dvar3_array , d3_array , d4_array , i5_array
• slow_phase() : function_minimizer
• smart_counter() : smart_counter
• smartlist() : smartlist
• sob_routine() : function_minimizer
• sobol_importance_routine() : function_minimizer
• solve() : safe_choleski_solver
• spdll_exception() : spdll_exception
• standard_type3_loop() : laplace_approximation_calculator
• start_get_importance_sampling_comnponent() : function_minimizer
• stddev_curvscale() : initial_params
• stddev_params() : stddev_params
• stddev_scale() : initial_df1b2params , initial_params
• stddev_vscale() : initial_params
• stop_criterion() : function_minimizer
• str() : adjson::array , adjson::null , adjson::value , adjson::boolean , adjson::string , adjson::json , adjson::object , adjson::number
• string() : adjson::string
• string_parser() : string_parser
• sub() : ivector , dvector , dvar_matrix , imatrix , banded_symmetric_dmatrix , d3_array , dmatrix , dvar4_array , dvar3_array , dvar_vector , dvar5_array , d4_array