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ADMB Documentation
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ADMB Documentation
-a65f1c97
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Description not yet available. More...
#include <adrndeff.h>
Private Member Functions | |
| virtual void | set_only_random_effects_active () |
| virtual void | set_only_random_effects_inactive () |
| virtual void | set_random_effects_active () |
| virtual void | set_random_effects_inactive () |
Additional Inherited Members | |
 Public Member Functions inherited from param_init_vector | |
| param_init_vector () | |
| Default constructor. More... | |
| virtual void | add_value (const dvector &, const dvector &, const int &, const double &, const dvector &) |
| virtual void | add_value (const dvector &, const int &) |
| void | allocate (int imin, int imax, int phasestart=1, const char *s="UNNAMED") |
| Allocate variable vector of parameters, then reads values from input data. More... | |
| void | allocate (const ad_integer &imin, const ad_integer &imax, const ad_integer &phasestart=1, const char *s="UNNAMED") |
| Allocate param_init_vector with dimension imin to imax using specified phase_start. More... | |
| void | allocate (int imin, int imax, const char *s="UNNAMED") |
| void | allocate (int imin, int imax, const ivector &ishare, const char *s="UNNAMED") |
| virtual void | bsave_value (uostream &uos) |
| virtual void | copy_value_to_vector (const dvector &x, const int &ii) |
| virtual void | curv_scale (const dvector &d, const dvector &x, const int &) |
| virtual void | dev_correction (const dmatrix &H, const int &ii) |
| virtual void | get_jacobian (const dvector &, const dvector &, const int &) |
| shareinfo * | get_share_flags () const |
| virtual void | hess_scale (const dvector &, const dvector &, const int &) |
| virtual const char * | label (void) |
| virtual void | mc_scale (const dvector &d, const dvector &x, const int &) |
| Description not yet available. More... | |
| param_init_vector & | operator= (const dvector &) |
| Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California. More... | |
| param_init_vector & | operator= (const dvar_vector &) |
| Assigns values from varvec to param_init_vector. More... | |
| param_init_vector & | operator= (const prevariable &) |
| Assigns value var to param_init_vector. More... | |
| param_init_vector & | operator= (const double &) |
| Assigns value val to param_init_vector. More... | |
| void | pvm_pack (void) |
| void | pvm_unpack (void) |
| void | report_value (void) |
| virtual void | restore_value (const ifstream &ifs) |
| virtual void | restore_value_from_vector (const dvector &, const int &) |
| virtual void | save_value (ofstream &ofs) |
| virtual void | save_value (const ofstream &ofs, int prec) |
| Write values of param_init_matrix into output stream _ofs. More... | |
| virtual void | save_value (const ofstream &ofs, int prec, const dvector &, int &offset) |
| Write values of g into output stream _ofs, then update offset index to the next set of data. More... | |
| virtual void | sd_scale (const dvector &d, const dvector &x, const int &) |
| virtual void | sd_vscale (const dvar_vector &d, const dvar_vector &x, const int &ii) |
| virtual void | set_simulation_bounds (const dmatrix &symbds, const int &ii) |
| virtual void | set_value (const dvar_vector &x, const int &ii, const dvariable &pen) |
| virtual void | set_value_inv (const dvector &x, const int &ii) |
| virtual void | setshare (const index_type &sf, const index_type &af) |
| virtual void | shared_set_value (const dvar_vector &, const int &, const dvariable &pen) |
| virtual void | shared_set_value_inv (const dvector &, const int &) |
| virtual int | shared_size_count (void) |
| virtual unsigned int | size_count () const |
| Returns the number of active parameters. More... | |
| Public Member Functions inherited from named_dvar_vector | |
| named_dvar_vector (void) | |
| void | allocate (int mmin, int mmax, const char *s) |
| void | allocate (const char *s) |
| named_dvar_vector & | operator= (const dvar_vector &m) |
| named_dvar_vector & | operator= (const dvector &m) |
| named_dvar_vector & | operator= (const double m) |
| named_dvar_vector & | operator= (const prevariable &m) |
| Public Member Functions inherited from dvar_vector | |
| dvar_vector (const dvar_vector &) | |
| Copy constructor. More... | |
| dvar_vector (const predvar_vector &) | |
| Description not yet available. More... | |
| dvar_vector () | |
| Default constructor. More... | |
| dvar_vector (int ncl, int ncu) | |
| Description not yet available. More... | |
| dvar_vector (int ncl, int ncu, kkludge_object) | |
| Description not yet available. More... | |
| dvar_vector (unsigned int sz, double *x) | |
| Description not yet available. More... | |
| dvar_vector (const independent_variables &) | |
| Description not yet available. More... | |
| dvar_vector (const param_init_number_vector &) | |
| Description not yet available. More... | |
| dvar_vector (const param_init_bounded_number_vector &) | |
| Description not yet available. More... | |
| dvar_vector (const dvector &) | |
| Description not yet available. More... | |
| dvar_vector (const char *) | |
| ~dvar_vector () | |
| Destructor. More... | |
| void | allocate (int, int) |
| Allocate dvar_vector with indexmin = ncl and indexmax = nch. More... | |
| void | allocate (void) |
| Does not allocate, but initializes dvar_vector to empty. More... | |
| void | allocate (const dvector &) |
| Allocate dvar_vector using indexes from v1. More... | |
| void | allocate (const dvar_vector &) |
| Allocate dvar_vector using indexes from v1. More... | |
| void | allocate (const ad_integer &, const ad_integer &) |
| Description not yet available. More... | |
| void | allocatec (const dvar_vector &) |
| Description not yet available. More... | |
| void | deallocate () |
| Deallocate dvar_vector memory. More... | |
| prevariable | elem (int i) |
| prevariable | elem (int i) const |
| double & | elem_value (int i) |
| double & | elem_value (int i) const |
| void | fill (const char *) |
| Fill variable vector from values in string s. More... | |
| void | fill_multinomial (const int &seed, const dvector &p) |
| Description not yet available. More... | |
| void | fill_multinomial (const random_number_generator &rng, const dvector &p) |
| Description not yet available. More... | |
| void | fill_randbi (long int &n, double) |
| Description not yet available. More... | |
| void | fill_randbi_ni (long int &n, double) |
| Description not yet available. More... | |
| void | fill_randn (long int &n) |
| Description not yet available. More... | |
| void | fill_randn_ni (long int &n) |
| Description not yet available. More... | |
| void | fill_randnegbinomial (double lambda, double tau, const random_number_generator &rng) |
| Description not yet available. More... | |
| void | fill_randpoisson (double lambda, const random_number_generator &rng) |
| Description not yet available. More... | |
| void | fill_randu (long int &n) |
| Description not yet available. More... | |
| void | fill_randu_ni (long int &n) |
| Description not yet available. More... | |
| void | fill_seqadd (double, double) |
| Description not yet available. More... | |
| unsigned int | get_ncopies () const |
| double_and_int * | get_va () |
| double_and_int * | get_va () const |
| int | indexmax () const |
| int | indexmin () const |
| void | initialize (const dvector &ww) |
| Description not yet available. More... | |
| void | initialize (void) |
| Description not yet available. More... | |
| double * | initpointer (void) |
| const double * | initpointer (void) const |
| int | operator! (void) const |
| dvar_vector | operator() (int lb, int ub) |
| prevariable | operator() (int i) |
| const prevariable | operator() (int i) const |
| dvar_vector | operator() (const lvector &) |
| Description not yet available. More... | |
| dvar_vector | operator() (const ivector &u) |
| Description not yet available. More... | |
| dvar_vector & | operator*= (const prevariable &d) |
| Description not yet available. More... | |
| dvar_vector & | operator*= (double d) |
| Description not yet available. More... | |
| dvar_vector & | operator++ (void) |
| dvar_vector & | operator+= (const prevariable &d) |
| Adds d to each element of dvar_vector. More... | |
| dvar_vector & | operator+= (double d) |
| Adds d to each element of dvar_vector. More... | |
| dvar_vector & | operator+= (const dvector &v1) |
| Description not yet available. More... | |
| dvar_vector & | operator+= (const dvar_vector &v1) |
| Description not yet available. More... | |
| dvar_vector | operator- () |
| Description not yet available. More... | |
| dvar_vector & | operator-- (void) |
| dvar_vector & | operator-= (const prevariable &d) |
| Substracts d from each element of dvar_vector. More... | |
| dvar_vector & | operator-= (double d) |
| Substracts d from each element of dvar_vector. More... | |
| dvar_vector & | operator-= (const dvector &v1) |
| Description not yet available. More... | |
| dvar_vector & | operator-= (const dvar_vector &v1) |
| Description not yet available. More... | |
| dvar_vector & | operator/= (const prevariable &d) |
| Description not yet available. More... | |
| dvar_vector & | operator/= (double d) |
| Description not yet available. More... | |
| dvar_vector & | operator= (const dvar_vector &t) |
| Assign values from other t to dvar_vector. More... | |
| dvar_vector & | operator= (const dvector &t) |
| Description not yet available. More... | |
| dvar_vector & | operator= (double t) |
| Assigns all elements for dvar_vector with t. More... | |
| dvar_vector & | operator= (const prevariable &t) |
| Assigns all elements for dvar_vector with t. More... | |
| prevariable | operator[] (int i) |
| const prevariable | operator[] (int i) const |
| void | read_from (const istream &) |
| Description not yet available. More... | |
| void | read_from (const uistream &) |
| Description not yet available. More... | |
| void | save_dvar_vector_position () const |
| Description not yet available. More... | |
| void | save_dvar_vector_value () const |
| Saves the size, address, and value information for a dvar_vector. More... | |
| void | shallow_copy (const dvar_vector &) |
| Shallow copy other data structure pointers. More... | |
| dvar_vector & | shift (int min) |
| Description not yet available. More... | |
| unsigned int | size () const |
| dvar_vector | sub (int lb, int ub) |
| void | write_on (const ostream &) const |
| Description not yet available. More... | |
| void | write_on (const uostream &) const |
| Description not yet available. More... | |
| Public Member Functions inherited from model_name_tag | |
| model_name_tag (void) | |
| void | allocate (const char *s) |
| const char * | get_name (void) |
| label_class | label (void) |
| Public Member Functions inherited from initial_params | |
| initial_params (void) | |
| Default constructor. More... | |
| virtual void | add_to_list (void) |
| void | allocate (int _phase_start) |
| double | get_initial_value (void) |
| int | get_phase_start (void) |
| double | get_scalefactor () |
| void | restore_phase_start (void) |
| void | set_active_flag (void) |
| void | set_inactive_flag (void) |
| void | set_initial_value (double x) |
| void | set_phase_start (int x) |
| void | set_scalefactor (const double) |
| Static Public Member Functions inherited from initial_params | |
| static void | add_random_vector (const dvector &x) |
| Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California. More... | |
| static void | add_random_vector (const dvector &y, const dvector &x, const double &ll, const dvector &diag) |
| static void | copy_all_values (const dvector &x, const int &ii) |
| static int | correct_for_dev_objects (const dmatrix &H) |
| static void | get_jacobian_value (const dvector &y, const dvector &jac) |
| static adstring | get_reportfile_name (void) |
| static int | montecarlo_scale (const dvector &d, const dvector &x) |
| Description not yet available. More... | |
| static int | num_active_calc (void) |
| static int | nvarcalc () |
| static int | nvarcalc_all (void) |
| Description not yet available. More... | |
| static void | read (void) |
| static dvariable | reset (const dvar_vector &x) |
| static dvariable | reset (const dvector &x) |
| static dvariable | reset (const dvar_vector &x, const dvector &pen) |
| static dvariable | reset1 (const dvar_vector &x, const dvector &g) |
| static dvariable | reset_all (const dvar_vector &x, const dvector &pen) |
| Description not yet available. More... | |
| static void | restore (const ifstream &ifs) |
| static void | restore_all_values (const dvector &x, const int &ii) |
| static void | restore_start_phase (void) |
| static void | save (void) |
| static void | save (const ofstream &ofs, int prec) |
| Author: David Fournier Copyright (c) 2008-2014 Regents of the University of California. More... | |
| static void | save_all (const ofstream &_ofs, int prec, const dvector &g) |
| Write all values of g into output stream _ofs. More... | |
| static void | set_active_only_random_effects (void) |
| static void | set_active_random_effects (void) |
| static void | set_all_simulation_bounds (const dmatrix &symbds) |
| static void | set_all_simulation_bounds (const dmatrix &symbds, const dvector &) |
| static void | set_inactive_only_random_effects (void) |
| static void | set_inactive_random_effects (void) |
| static int | stddev_curvscale (const dvector &d, const dvector &x) |
| static int | stddev_scale (const dvector &d, const dvector &x) |
| static int | stddev_vscale (const dvar_vector &d, const dvar_vector &x) |
| static void | xinit (const dvector &x) |
| static void | xinit1 (const dvector &x, const dvector &g) |
| static void | xinit_all (const dvector &x) |
| Description not yet available. More... | |
| Public Attributes inherited from dvar_vector | |
| int | index_max |
| int | index_min |
| arr_link * | link_ptr |
| vector_shapex * | shape |
| double_and_int * | va |
| Public Attributes inherited from initial_params | |
| int | phase_save |
| int | phase_start |
| int | phase_stop |
| Static Public Attributes inherited from initial_params | |
| static int | current_phase =1 |
| static bool | in_hessian_phase = false |
| static int | max_num_initial_params = 0 |
| static int | max_number_phases =1 |
| static int | mc_phase =0 |
| static int | mceval_phase =0 |
| static int | num_active_initial_params |
| static int | num_initial_params = 0 |
| static int | restart_phase =0 |
| static int | sd_phase =0 |
| static int | straight_through_flag =0 |
| static adlist_ptr | varsptr |
| Protected Member Functions inherited from initial_params | |
| virtual | ~initial_params () |
| Destructor. More... | |
| Protected Attributes inherited from model_name_tag | |
| adstring | name |
| Protected Attributes inherited from initial_params | |
| int | active_flag |
| double | initial_value |
| int | initial_value_flag |
| double | scalefactor |
| shareinfo * | share_flags |
Description not yet available.
Definition at line 80 of file adrndeff.h.
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privatevirtual |
Reimplemented from initial_params.
Definition at line 16 of file model52.cpp.
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privatevirtual |
Reimplemented from initial_params.
Definition at line 50 of file model52.cpp.
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privatevirtual |
Reimplemented from initial_params.
Definition at line 80 of file model52.cpp.
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privatevirtual |
Reimplemented from initial_params.
Definition at line 110 of file model52.cpp.
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