Description not yet available. More...

#include <adrndeff.h>

Private Member Functions
virtual void	set_only_random_effects_active ()

virtual void	set_only_random_effects_inactive ()

virtual void	set_random_effects_active ()

virtual void	set_random_effects_inactive ()

Additional Inherited Members
Public Member Functions inherited from param_init_matrix
	param_init_matrix (void)

virtual void	add_value (const dvector &, const dvector &, const int &, const double &, const dvector &)

virtual void	add_value (const dvector &, const int &)

void	allocate (int rmin, int rmax, int cmin, int cmax, int phase_start=1, const char *="UNNAMED")

void	allocate (int rmin, int rmax, int cmin, int cmax, const char *="UNNAMED")

void	allocate (const ad_integer &imin, const ad_integer &imax, const index_type &imin2, const index_type &imax2, const ad_integer &phase_start, const char *s)
	Allocates matrix with row dimensions imin to imax and column dimensions imin2 to imax2 using specified phase_start. More...

void	allocate (const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, const char *="UNNAMED")
	Allocates matrix with row dimensions rmin to rmax and column dimensions cmin to cmax with phase_start defaulting to 1. More...

void	allocate (const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, int phase_start=1, const char *="UNNAMED")
	Allocates matrix with row dimensions rmin to rmax and column dimensions cmin to cmax using specified phase_start. More...

virtual void	bsave_value (uostream &uos)

virtual void	copy_value_to_vector (const dvector &x, const int &ii)

virtual void	curv_scale (const dvector &d, const dvector &x, const int &)

virtual void	get_jacobian (const dvector &, const dvector &, const int &)

virtual void	hess_scale (const dvector &, const dvector &, const int &)

virtual const char *	label (void)

virtual void	mc_scale (const dvector &d, const dvector &x, const int &)
	Description not yet available. More...

param_init_matrix &	operator= (const dmatrix &m)
	Assigns values from mat to param_init_matrix. More...

param_init_matrix &	operator= (const dvar_matrix &m)
	Assigns values from _m to param_init_matrix. More...

param_init_matrix &	operator= (const dvariable &m)
	Assigns value d to all elements of param_init_matrix. More...

param_init_matrix &	operator= (const double &m)
	Assigns value d to all elements of param_init_matrix. More...

void	report_value (void)

virtual void	restore_value (const ifstream &ifs)

virtual void	restore_value_from_vector (const dvector &, const int &)

virtual void	save_value (ofstream &ofs)

virtual void	save_value (const ofstream &ofs, int prec, const dvector &, int &offset)
	Write values of g into output stream _ofs, then update offset index to the next set of data. More...

virtual void	save_value (const ofstream &ofs, int prec)
	Write values of param_init_matrix into output stream _ofs. More...

virtual void	sd_scale (const dvector &d, const dvector &x, const int &ii)

virtual void	sd_vscale (const dvar_vector &d, const dvar_vector &x, const int &ii)

virtual void	set_value (const dvar_vector &x, const int &ii, const dvariable &pen)

virtual void	set_value_inv (const dvector &x, const int &ii)

virtual void	setshare (const index_type &sf, const index_type &af)

virtual unsigned int	size_count () const
	Returns the number of active parameters. More...

Public Member Functions inherited from named_dvar_matrix
	named_dvar_matrix (void)

void	allocate (int rmin, int rmax, int cmin, int cmax, const char *s)

void	allocate (int rmin, int rmax, const char *s)

void	allocate (const char *s)

void	allocate (int rmin, int rmax, const index_type &cmin, const index_type &cmax, const char *s)

named_dvar_matrix &	operator= (const double m)
	Assign named_dvar_matrix with value. More...

named_dvar_matrix &	operator= (const dmatrix &m)
	Assigns named_dvar_matrix with values from dmatrix dm. More...

named_dvar_matrix &	operator= (const dvar_matrix &m)
	Assign named_dvar_matrix with values. More...

named_dvar_matrix &	operator= (const dvariable &m)
	Assign named_dvar_matrix with value. More...

Public Member Functions inherited from dvar_matrix
	dvar_matrix ()
	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California. More...

	dvar_matrix (const banded_symmetric_dvar_matrix &v)
	Description not yet available. More...

	dvar_matrix (const banded_lower_triangular_dvar_matrix &v)
	Description not yet available. More...

	dvar_matrix (const param_init_vector_vector &)

	dvar_matrix (const param_init_bounded_vector_vector &)

	dvar_matrix (const param_init_bounded_number_matrix &)
	Description not yet available. More...

	dvar_matrix (const ad_integer &nrl, const ad_integer &nrh, const index_type &ncl, const index_type &nch)
	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California. More...

	dvar_matrix (int, int, int, int)
	Constructs AD variable matrix with dimensions nrl to nrh by ncl to nch. More...

	dvar_matrix (int, int)
	Description not yet available. More...

	dvar_matrix (int, int, kkludge_object kk)
	Description not yet available. More...

	dvar_matrix (int, int, const ivector &, const ivector &)
	Description not yet available. More...

	dvar_matrix (int, int, int, const ivector &)
	Description not yet available. More...

	dvar_matrix (const dvar_matrix &)
	Copy constructor. More...

	dvar_matrix (const dmatrix &)
	Copy constructor. More...

	~dvar_matrix ()
	Destructor. More...

void	allocate (int nrl, int nrh, int ncl, int nch)
	Allocates AD variable matrix with dimensions nrl to nrh by ncl to nch. More...

void	allocate (int nrl, int nrh)
	Allocate variable matrix with dimension [nrl to nrh] where columns are empty. More...

void	allocate (ad_integer nrl, ad_integer nrh)
	Allocate variable matrix with dimension [nrl to nrh] where columns are empty. More...

void	allocate (const dmatrix &m1)
	Allocate variable matrix using the same dimensions as m1. More...

void	allocate (const dvar_matrix &m1)
	Allocate variable matrix using the same dimensions as m1. More...

void	allocate (int nrl, int nrh, const ivector &ncl, const ivector &nch)
	Allocate variable matrix with dimensions [nrl to nrh] x [ncl to nch] where ncl and nch. More...

void	allocate (int nrl, int nrh, int ncl, const ivector &nch)
	Allocate variable matrix with dimensions [nrl to nrh] x [ncl to nch] where nch is a vector of indexes. More...

void	allocate (int nrl, int nrh, const ivector &ncl, int nch)
	Allocate variable matrix with dimensions [nrl to nrh] x [ncl to nch] where ncl is a vector of indexes. More...

void	allocate (void)
	Does not allocate, but initializes members. More...

void	allocate (const ad_integer &nrl, const ad_integer &nrh, const index_type &ncl, const index_type &nch)
	Allocates AD variable matrix with dimensions nrl to nrh by ncl to nch. More...

void	colfill (int j, const dvar_vector &v)
	Fills column of a matrix with a vector (supplied) More...

void	colfill_randn (const int &j, long int &n)
	Description not yet available. More...

void	colfill_randn_ni (const int &j, long int &n)
	Description not yet available. More...

void	colfill_randu (const int &j, long int &n)
	Description not yet available. More...

void	colfill_randu_ni (const int &j, long int &n)
	Description not yet available. More...

void	colfill_seqadd (const int &, double, double)
	Fills column of a matrix with a sequence of the form base, base+offset, base+2*offset,... More...

void	colfill_seqadd_ni (const int &, double, double)

int	colmax (void) const

int	colmin (void) const

void	colshift (int min)
	Description not yet available. More...

unsigned int	colsize () const

void	deallocate ()
	Deallocate dvar_matrix memory. More...

dvar_vector &	elem (int i)

prevariable	elem (int i, int j)

dvar_vector &	elem (int i) const

prevariable	elem (int i, int j) const

double &	elem_value (int i, int j)

const double &	elem_value (int i, int j) const

void	fill (const char *)
	Fill values of dvar_matrix with text input from s with format rowmin...rowmax where ith row is {colmin,...,colmax}. More...

void	fill_randn (long int &n)
	Description not yet available. More...

void	fill_randn_ni (long int &n)
	Description not yet available. More...

void	fill_randu (long int &n)
	Description not yet available. More...

void	fill_randu_ni (long int &n)
	Description not yet available. More...

double	fill_seqadd (double, double)
	Description not yet available. More...

unsigned int	get_ncopies () const

int	indexmax (void) const

int	indexmin (void) const

void	initialize (void)
	Zero initialize allocated dvar_matrix, then saves adjoint function and position data. More...

int	operator! (void) const

dvar_vector &	operator() (int i)

const dvar_vector &	operator() (int i) const

prevariable	operator() (int i, int j)

prevariable	operator() (int i, int j) const

dvar_matrix &	operator*= (const prevariable &t)
	Description not yet available. More...

dvar_matrix &	operator*= (double t)
	Description not yet available. More...

dvar_matrix &	operator++ (void)

dvar_matrix &	operator+= (const dvar_matrix &x)
	Description not yet available. More...

dvar_matrix &	operator+= (const dmatrix &x)
	Description not yet available. More...

dvar_matrix &	operator-- (void)

dvar_matrix &	operator-= (const dvar_matrix &x)
	Description not yet available. More...

dvar_matrix &	operator-= (const dmatrix &x)
	Description not yet available. More...

dvar_matrix &	operator/= (const prevariable &t)
	Description not yet available. More...

dvar_matrix &	operator/= (double t)
	Description not yet available. More...

dvar_matrix &	operator= (const dvar_matrix &)
	Assigns other values to dvar_matrix. More...

dvar_matrix &	operator= (const dmatrix &)
	Assigns scalar matrix values to dvar_matrix. More...

dvar_matrix &	operator= (double t)
	Description not yet available. More...

dvar_matrix &	operator= (const prevariable &t)
	Description not yet available. More...

dvar_vector &	operator[] (int)

const dvar_vector &	operator[] (int) const

void	read_from (const istream &)
	Read values to dvar_matrix from input istream s. More...

void	read_from (const uistream &)
	Read values to dvar_matrix from input stream s. More...

void	rowfill (int j, const dvar_vector &v)
	Fills row of a matrix with a vector (supplied) More...

void	rowfill_randn (const int &i, long int &n)
	Description not yet available. More...

void	rowfill_randn_ni (const int &i, long int &n)
	Description not yet available. More...

void	rowfill_randu (const int &i, long int &n)
	Description not yet available. More...

void	rowfill_randu_ni (const int &i, long int &n)
	Description not yet available. More...

void	rowfill_seqadd (const int &, double, double)
	Fills vector with a sequence of the form base, base+offset, base+2*offset,... More...

int	rowmax (void) const

int	rowmin (void) const

void	rowshift (int min)
	Description not yet available. More...

unsigned int	rowsize () const

void	save_dvar_matrix_position () const
	Description not yet available. More...

void	save_dvar_matrix_value () const
	Saves the size, address, and value information for a dvar_matrix. More...

void	shallow_copy (const dvar_matrix &)
	Shallow copy other data structure pointers. More...

dvar_matrix	sub (int, int)
	Description not yet available. More...

void	write_on (const ostream &) const
	Description not yet available. More...

void	write_on (const uostream &) const
	Write values from dvar_matrix to output stream s. More...

Public Member Functions inherited from model_name_tag
	model_name_tag (void)

void	allocate (const char *s)

const char *	get_name (void)

label_class	label (void)

Public Member Functions inherited from initial_params
	initial_params (void)
	Default constructor. More...

virtual void	add_to_list (void)

void	allocate (int _phase_start)

double	get_initial_value (void)

int	get_phase_start (void)

double	get_scalefactor ()

void	restore_phase_start (void)

void	set_active_flag (void)

void	set_inactive_flag (void)

void	set_initial_value (double x)

void	set_phase_start (int x)

void	set_scalefactor (const double)

Static Public Member Functions inherited from initial_params
static void	add_random_vector (const dvector &x)
	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California. More...

static void	add_random_vector (const dvector &y, const dvector &x, const double &ll, const dvector &diag)

static void	copy_all_values (const dvector &x, const int &ii)

static int	correct_for_dev_objects (const dmatrix &H)

static void	get_jacobian_value (const dvector &y, const dvector &jac)

static adstring	get_reportfile_name (void)

static int	montecarlo_scale (const dvector &d, const dvector &x)
	Description not yet available. More...

static int	num_active_calc (void)

static int	nvarcalc ()

static int	nvarcalc_all (void)
	Description not yet available. More...

static void	read (void)

static dvariable	reset (const dvar_vector &x)

static dvariable	reset (const dvector &x)

static dvariable	reset (const dvar_vector &x, const dvector &pen)

static dvariable	reset1 (const dvar_vector &x, const dvector &g)

static dvariable	reset_all (const dvar_vector &x, const dvector &pen)
	Description not yet available. More...

static void	restore (const ifstream &ifs)

static void	restore_all_values (const dvector &x, const int &ii)

static void	restore_start_phase (void)

static void	save (void)

static void	save (const ofstream &ofs, int prec)
	Author: David Fournier Copyright (c) 2008-2014 Regents of the University of California. More...

static void	save_all (const ofstream &_ofs, int prec, const dvector &g)
	Write all values of g into output stream _ofs. More...

static void	set_active_only_random_effects (void)

static void	set_active_random_effects (void)

static void	set_all_simulation_bounds (const dmatrix &symbds)

static void	set_all_simulation_bounds (const dmatrix &symbds, const dvector &)

static void	set_inactive_only_random_effects (void)

static void	set_inactive_random_effects (void)

static int	stddev_curvscale (const dvector &d, const dvector &x)

static int	stddev_scale (const dvector &d, const dvector &x)

static int	stddev_vscale (const dvar_vector &d, const dvar_vector &x)

static void	xinit (const dvector &x)

static void	xinit1 (const dvector &x, const dvector &g)

static void	xinit_all (const dvector &x)
	Description not yet available. More...

Public Attributes inherited from initial_params
int	phase_save

int	phase_start

int	phase_stop

Static Public Attributes inherited from initial_params
static int	current_phase =1

static bool	in_hessian_phase = false

static int	max_num_initial_params = 0

static int	max_number_phases =1

static int	mc_phase =0

static int	mceval_phase =0

static int	num_active_initial_params

static int	num_initial_params = 0

static int	restart_phase =0

static int	sd_phase =0

static int	straight_through_flag =0

static adlist_ptr	varsptr

Protected Member Functions inherited from initial_params
virtual	~initial_params ()
	Destructor. More...

Protected Attributes inherited from model_name_tag
adstring	name

Protected Attributes inherited from initial_params
int	active_flag

double	initial_value

int	initial_value_flag

double	scalefactor

shareinfo *	share_flags

Detailed Description

Description not yet available.

Definition at line 105 of file adrndeff.h.

Member Function Documentation

void random_effects_matrix::set_only_random_effects_active ( void )

privatevirtual

Reimplemented from initial_params.

Definition at line 22 of file model52.cpp.

void random_effects_matrix::set_only_random_effects_inactive ( void )

privatevirtual

Reimplemented from initial_params.

Definition at line 55 of file model52.cpp.

void random_effects_matrix::set_random_effects_active ( void )

privatevirtual

Reimplemented from initial_params.

Definition at line 85 of file model52.cpp.

void random_effects_matrix::set_random_effects_inactive ( void )

privatevirtual

Reimplemented from initial_params.

Definition at line 115 of file model52.cpp.

The documentation for this class was generated from the following files:

Private Member Functions

Additional Inherited Members

Detailed Description

Member Function Documentation