ad_comm Class Reference

Description not yet available. More...

#include <fvar.hpp>

Public Member Functions
virtual void	get_slave_assignments (void)

Static Public Member Functions
static streampos	change_datafile_name (const adstring &s, const streampos &off=0)
	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California. More...
static streampos	change_pinfile_name (const adstring &s, const streampos &off=0)
	Change the global_parfile stream using input_file. More...

Static Public Attributes
static adstring	adprogram_name
static int	argc =0
static char **	argv =NULL
static int	bandwidth =0
static unsigned char	directory_prefix ='\\'
static uistream *	global_bparfile =NULL
static cifstream *	global_datafile =NULL
static ofstream *	global_logfile =NULL
static cifstream *	global_parfile =NULL
static int	no_atlas_flag =0
static int	no_ln_det_choleski_flag =0
static int	no_pvm_flag =0
static char	option_flags []
static int	print_hess_and_exit_flag
static adpvm_manager *	pvm_manager = NULL
static adstring	subdir
static unsigned int	wd_flag =0
static adstring	working_directory_path

Protected Member Functions
	ad_comm ()
	Default constructor. More...
	ad_comm (int argc, char *argv[])
virtual	~ad_comm ()
	Destructor. More...
void	allocate ()

Detailed Description

Description not yet available.

Parameters

Definition at line 8828 of file fvar.hpp.

Constructor & Destructor Documentation

ad_comm::ad_comm ( )

protected

Default constructor.

Definition at line 366 of file model7.cpp.

ad_comm::ad_comm ( int  argc, char *  argv[]  )

protected

Definition at line 45 of file model7.cpp.

ad_comm::~ad_comm ( )

protectedvirtual

Destructor.

Definition at line 555 of file model7.cpp.

Member Function Documentation

void ad_comm::allocate ( void  )

protected

Definition at line 370 of file model7.cpp.

Referenced by ad_comm().

streampos ad_comm::change_datafile_name ( const adstring &  input_file, const streampos &  offset = 0  )

static

Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California.

Change the global_datafile stream using file input_file. Returns the current streampos of existing open file, else returns 0.

Parameters

input_file	new input data file.
off	change to this offset if file exists.

Definition at line 15 of file model17.cpp.

streampos ad_comm::change_pinfile_name ( const adstring &  input_file, const streampos &  offset = 0  )

static

Change the global_parfile stream using input_file.

Returns the current streampos of existing open file, else returns 0.

Parameters

input_file	new input par file.
offset	change to this offset if file exists.

Definition at line 53 of file model17.cpp.

virtual void ad_comm::get_slave_assignments ( void  )

virtual

Member Data Documentation

adstring ad_comm::adprogram_name

static

Definition at line 8860 of file fvar.hpp.

Referenced by ad_comm(), allocate(), function_minimizer::computations1(), function_minimizer::depvars_routine(), function_minimizer::get_bigS(), function_minimizer::hess_inv(), function_minimizer::hess_routine_noparallel(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hess_step(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::likeprof_routine(), make_preliminary_hist(), function_minimizer::mcmc_eval(), function_minimizer::mcmc_routine(), function_minimizer::monte_carlo_routine(), function_minimizer::nuts_mcmc_routine(), print_hist_data(), function_minimizer::projected_hess_determinant(), read_covariance_matrix(), read_empirical_covariance_matrix(), read_hessian_matrix_and_scale(), read_hessian_matrix_and_scale1(), read_hist_data(), read_old_scale(), function_minimizer::rwm_mcmc_routine(), initial_params::save(), function_minimizer::sd_routine(), function_minimizer::shmc_mcmc_routine(), function_minimizer::unrestricted_hess_determinant(), and write_empirical_covariance_matrix().

int ad_comm::argc =0

static

Definition at line 8863 of file fvar.hpp.

Referenced by ad_comm(), allocate(), allocate_dvariable_space(), function_minimizer::computations(), DF_FILE::DF_FILE(), dlist::dlist(), laplace_approximation_calculator::do_newton_raphson_banded(), get_f1b2buffer_size(), get_option_number(), grad_stack::grad_stack(), gradient_structure::gradient_structure(), function_minimizer::hess_inv(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hess_step(), function_minimizer::hybrid_mcmc_routine(), laplace_approximation_calculator::laplace_approximation_calculator(), function_minimizer::likeprof_routine(), function_minimizer::limited_memory_quasi_newton(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_computations(), function_minimizer::mcmc_routine(), function_minimizer::minimize(), function_minimizer::nuts_mcmc_routine(), laplace_approximation_calculator::operator()(), function_minimizer::prof_minimize_re(), function_minimizer::pvm_master_mcmc_computations(), function_minimizer::quasi_newton_block(), function_minimizer::random_effects_maximization(), function_minimizer::rwm_mcmc_routine(), function_minimizer::shmc_mcmc_routine(), DF_FILE::~DF_FILE(), fixed_smartlist::~fixed_smartlist(), fixed_smartlist2::~fixed_smartlist2(), grad_stack::~grad_stack(), and test_smartlist::~test_smartlist().

char ** ad_comm::argv =NULL

static

Definition at line 8866 of file fvar.hpp.

Referenced by ad_comm(), allocate(), allocate_dvariable_space(), function_minimizer::computations(), DF_FILE::DF_FILE(), dlist::dlist(), laplace_approximation_calculator::do_newton_raphson_banded(), get_f1b2buffer_size(), get_option_number(), grad_stack::grad_stack(), gradient_structure::gradient_structure(), function_minimizer::hess_inv(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::hess_step(), function_minimizer::hybrid_mcmc_routine(), laplace_approximation_calculator::laplace_approximation_calculator(), function_minimizer::likeprof_routine(), function_minimizer::limited_memory_quasi_newton(), function_minimizer::limited_memory_quasi_newton_block(), function_minimizer::mcmc_computations(), function_minimizer::mcmc_routine(), function_minimizer::minimize(), function_minimizer::nuts_mcmc_routine(), laplace_approximation_calculator::operator()(), function_minimizer::prof_minimize_re(), function_minimizer::pvm_master_mcmc_computations(), function_minimizer::quasi_newton_block(), function_minimizer::random_effects_maximization(), function_minimizer::rwm_mcmc_routine(), function_minimizer::shmc_mcmc_routine(), DF_FILE::~DF_FILE(), fixed_smartlist::~fixed_smartlist(), fixed_smartlist2::~fixed_smartlist2(), grad_stack::~grad_stack(), and test_smartlist::~test_smartlist().

int ad_comm::bandwidth =0

static

Definition at line 8837 of file fvar.hpp.

Referenced by laplace_approximation_calculator::laplace_approximation_calculator(), and function_minimizer::minimize().

unsigned char ad_comm::directory_prefix ='\\'

static

Definition at line 8865 of file fvar.hpp.

Referenced by allocate().

uistream * ad_comm::global_bparfile =NULL

static

Definition at line 8859 of file fvar.hpp.

Referenced by ad_make_code_reentrant(), param_init_vector::allocate(), param_init_bounded_vector::allocate(), param_init_number::allocate(), param_init_bounded_number::allocate(), param_init_matrix::allocate(), param_init_bounded_matrix::allocate(), param_init_d3array::allocate(), and allocate().

cifstream * ad_comm::global_datafile =NULL

static

Definition at line 8856 of file fvar.hpp.

Referenced by ad_make_code_reentrant(), data_int::allocate(), init_adstring::allocate(), data_adstring_array::allocate(), init_line_adstring::allocate(), data_matrix::allocate(), data_3array::allocate(), data_3iarray::allocate(), data_7array::allocate(), data_6array::allocate(), data_5array::allocate(), data_4array::allocate(), data_4iarray::allocate(), data_imatrix::allocate(), data_vector::allocate(), data_ivector::allocate(), data_number::allocate(), change_datafile_name(), and ~ad_comm().

ofstream * ad_comm::global_logfile =NULL

static

Definition at line 8858 of file fvar.hpp.

Referenced by allocate(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), fmm::fmin(), laplace_approximation_calculator::get_complete_hessian(), laplace_approximation_calculator::get_newton_raphson_info(), get_output_stream(), ~ad_comm(), DF_FILE::~DF_FILE(), fixed_smartlist::~fixed_smartlist(), fixed_smartlist2::~fixed_smartlist2(), grad_stack::~grad_stack(), and test_smartlist::~test_smartlist().

cifstream * ad_comm::global_parfile =NULL

static

Definition at line 8857 of file fvar.hpp.

Referenced by ad_make_code_reentrant(), param_init_vector::allocate(), param_init_bounded_vector::allocate(), param_init_number::allocate(), param_init_bounded_number::allocate(), param_init_matrix::allocate(), param_init_bounded_matrix::allocate(), param_init_d3array::allocate(), allocate(), change_pinfile_name(), and ~ad_comm().

int ad_comm::no_atlas_flag =0

static

Definition at line 8840 of file fvar.hpp.

Referenced by ad_comm(), laplace_approximation_calculator::default_calculations(), laplace_approximation_calculator::default_calculations_check_derivatives(), and laplace_approximation_calculator::do_newton_raphson_banded().

int ad_comm::no_ln_det_choleski_flag =0

static

Definition at line 8841 of file fvar.hpp.

Referenced by calculate_importance_sample(), calculate_importance_sample_block_diagonal(), calculate_importance_sample_block_diagonal_funnel(), calculate_importance_sample_block_diagonal_option2(), calculate_importance_sample_block_diagonal_option_antithetical(), calculate_importance_sample_funnel(), calculate_laplace_approximation(), do_gauss_hermite_block_diagonal(), do_gauss_hermite_block_diagonal_multi(), and laplace_approximation_calculator::laplace_approximation_calculator().

int ad_comm::no_pvm_flag =0

static

Definition at line 8839 of file fvar.hpp.

char ad_comm::option_flags

static

Definition at line 8862 of file fvar.hpp.

int ad_comm::print_hess_and_exit_flag

static

Definition at line 8838 of file fvar.hpp.

Referenced by laplace_approximation_calculator::default_calculations(), get_second_ders(), and laplace_approximation_calculator::laplace_approximation_calculator().

adpvm_manager * ad_comm::pvm_manager = NULL

static

Definition at line 8849 of file fvar.hpp.

Referenced by ad_comm(), function_minimizer::computations1(), DF_FILE::DF_FILE(), grad_stack::grad_stack(), function_minimizer::hess_routine(), function_minimizer::hess_routine_random_effects(), function_minimizer::likeprof_routine(), function_minimizer::minimize(), function_minimizer::monte_carlo_routine(), laplace_approximation_calculator::operator()(), and set_partition_sizes().

adstring ad_comm::subdir

static

Definition at line 8851 of file fvar.hpp.

Referenced by DF_FILE::DF_FILE(), and grad_stack::grad_stack().

unsigned int ad_comm::wd_flag =0

static

Definition at line 8864 of file fvar.hpp.

Referenced by allocate(), change_datafile_name(), function_minimizer::depvars_routine(), function_minimizer::get_bigS(), function_minimizer::hess_inv(), function_minimizer::hess_routine_noparallel(), function_minimizer::hess_routine_noparallel_random_effects(), function_minimizer::monte_carlo_routine(), function_minimizer::projected_hess_determinant(), read_covariance_matrix(), read_hessian_matrix_and_scale(), read_hessian_matrix_and_scale1(), read_old_scale(), function_minimizer::sd_routine(), and function_minimizer::unrestricted_hess_determinant().

adstring ad_comm::working_directory_path

static

Definition at line 8861 of file fvar.hpp.

Referenced by allocate(), and change_datafile_name().

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The documentation for this class was generated from the following files:

• fvar.hpp (Last Changed on August 07, 2022 for git-revision 0a920593f1602d0b526036677a330e80065904b7.)
• adglobl.cpp (Last Changed on August 03, 2022 for git-revision f8640678bd7af83c55e23f39d73768d9c698f51a.)
• model17.cpp (Last Changed on June 14, 2017 for git-revision 5b41e5725204ba9dd26b07717142536a06bd7403.)
• model7.cpp (Last Changed on May 09, 2022 for git-revision 5513524e7e10a5a41f689a73f266698e82684a49.)