File List

Here is a list of all files with brief descriptions:

ad_cif.cpp	Overloaded cifstream operators for autodif classes
adglobl.cpp	Global and static types for ad_comm, initial_params and objective_function_values classes
adjson.cpp
adjson.h
admanip.cpp	Overloaded ostream outputs functions
admb_messages.h
admodel.cpp	Pragma implementation "admodel.h"
admodel.h	Description not yet available
adoption.hpp
adpool.cpp
adpool.h	Description not yet available
adrndeff.h	Description not yet available
adsleep.cpp	Function ADSleep
adstring.hpp
adstring_array.cpp	Member function for class adstring_array operator=(const adstring_array&)
alk.cpp	Age-length probability transition matrix
amoeba.cpp
atoi.cpp	Function for adstring atoi
banner.cpp	Function banner
baranov.cpp	Routines for iteratively solving the Baranov catch equation
bet_rand.cpp	Function better_rand
betacf_val.hpp
linad99/bounder.cpp	Function bounder for double and dvariable type
df1b2-separable/bounder.cpp
boundfun.cpp	Code to implement placing constraints on parameters. See in Section 10.1 of the AUTODIF manual. The code in thse section of the AUTODIF manual appears to be out of date with respect to some of the code in this file
c_ghk.cpp
cbessel.cpp	Inspired from NR
cbetacf.cpp	Wrapper for betacf function
cbetai.cpp
cbetdev.cpp	Function beta_deviate
cbivnorm.cpp
ccumdbetainv.cpp
ccumdexp.cpp	Functions inv_cumd_exponential(double) cumd_exponential(double)
ccumdlog.cpp
cgamdens.cpp	Constant object functions to compute gamma_density and log_gamma_density probabilities
cgamdev.cpp	Functions to compute incomplete gamma
cifstrem.cpp	Implementation of the class cifstream
cifstrem.h	Definition of the cifstream class
cinvcumdt.cpp
clist.cpp	Member functions for class clist
clist.h
clrscr.cpp
cmpdif10.cpp
cmpdif11.cpp	Description not yet available
cmpdif2.cpp	Description not yet available
cmpdif3.cpp	Description not yet available
cmpdif4.cpp	Description not yet available
cmpdif5.cpp	Description not yet available
cmpdif6.cpp	Description not yet available
cmpdif7.cpp	Description not yet available
cmpdif8.cpp	Description not yet available
cmpdif9.cpp	Description not yet available
cnegbin.cpp	$Id$
cnorlogmix.cpp	Description not yet available
cnormgam.cpp	Description not yet available
cnormmix.cpp	Description not yet available
combc.cpp	This file has routines for the constant type log-factorial, log-binomial, and log-gamma functions for scalar and vector arguments
combv.cpp	$Id$ Author: Unknown
compare.cpp	Description not yet available
conjprod.cpp	Description not yet available
cranfill.cpp
cregress.cpp	Description not yet available
cspline.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
cumd_cau.cpp	Description not yet available
cumdist.cpp	Description not yet available
d3_io.cpp
d3_io1.cpp
d3arr.cpp
d3arr1.cpp
d3arr10.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
d3arr11.cpp
d3arr12.cpp	Description not yet available
d3arr2a.cpp
d3arr2b.cpp
d3arr2c.cpp
d3arr3.cpp
d3arr4.cpp	Functions to compute square with various types
d3arr5.cpp	Description not yet available
d3arr6.cpp	Description not yet available
d3arr7.cpp
d3arr8.cpp
d3arr9.cpp
d4_io.cpp
d4_io1.cpp
d4arr.cpp
d4arr1.cpp
d4arr2.cpp
d4arr3.cpp	Author: David Fournier Copyright (c) 2008-2015 Regents of the University of California
d5arr.cpp
d5arr1.cpp
d5arr3.cpp	Description not yet available
d6arr.cpp
d6arr1.cpp
d6arr2.cpp
d7arr.cpp
d7arr1.cpp
d7arr2.cpp	Description not yet available
dbeta.cpp	Beta density functions
dbinom.cpp	Binomial density functions
ddlist.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
def_eval.cpp	Description not yet available
denorm.cpp	Description not yet available
dep_hess.cpp	Function function_minimizer::dep_hess_routine
depvars.cpp	Description not yet available
derch.cpp	Description not yet available
df11fun.cpp
df11fun.h
df12fun.cpp	Description not yet available
df12fun.h	Description not yet available
df13fun.cpp	Description not yet available
df13fun.h	Description not yet available
df1b2bessel.cpp
df1b2bet.cpp
df1b2betdev.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
df1b2chkder.cpp
df1b2cum.cpp
df1b2f10.cpp
df1b2f11.cpp
df1b2f12.cpp
df1b2f13.cpp
df1b2f14.cpp	Description not yet available
df1b2f15.cpp	Description not yet available
df1b2f16.cpp	Description not yet available
df1b2f17.cpp	Description not yet available
df1b2f18.cpp	Description not yet available
df1b2f19.cpp	Description not yet available
df1b2f20.cpp	$Id$
df1b2f21.cpp	Description not yet available
df1b2f24.cpp	Description not yet available
df1b2f25.cpp	Description not yet available
df1b2f26.cpp	Description not yet available
df1b2f27.cpp	Description not yet available
df1b2f28.cpp	Description not yet available
df1b2fn2.cpp	Description not yet available
df1b2fn3.cpp	Description not yet available
df1b2fn4.cpp	Description not yet available
df1b2fn5.cpp	Description not yet available
df1b2fn7.cpp	Description not yet available
df1b2fn8.cpp	Description not yet available
df1b2fnl.cpp	Description not yet available
df1b2fnl.h	Description not yet available
df1b2fun.cpp	Description not yet available
df1b2fun.h	Description not yet available
df1b2funx.cpp	Description not yet available
df1b2gh.cpp	Description not yet available
df1b2ghmult.cpp	Description not yet available
df1b2glo.cpp	Description not yet available
df1b2im2.cpp	Description not yet available
df1b2im3.cpp	Description not yet available
df1b2im3f.cpp	Description not yet available
df1b2im4.cpp	Description not yet available
df1b2im5.cpp	Description not yet available
df1b2imp.cpp	Description not yet available
df1b2impf.cpp	Description not yet available
df1b2impspf.cpp	Description not yet available
df1b2invcumdbeta.cpp
df1b2lap.cpp	Description not yet available
df1b2lme.cpp	Description not yet available
df1b2lmn2.cpp	Description not yet available
df1b2loc.cpp	Description not yet available
df1b2loc.h	Description not yet available
df1b2lp1.cpp	Description not yet available
df1b2lp10.cpp	Description not yet available
df1b2lp11.cpp	Description not yet available
df1b2lp12.cpp	This file can probably be removed
df1b2lp2.cpp	Description not yet available
df1b2lp6.cpp	Description not yet available
df1b2lp7.cpp	Description not yet available
df1b2lp8.cpp	Description not yet available
df1b2lp9.cpp	Description not yet available
df1b2mat.cpp	Description not yet available
df1b2min.cpp	Description not yet available
df1b2min2.cpp	This file mainly added for defining double_x - df1b2variable_y, which define in df1b2fun.h
df1b2min3.cpp	This file mainly added for defining df1b2variable_x - double_y, which define in df1b2fun.h
df1b2negb.cpp	Description not yet available
df1b2norlogmix.cpp	Description not yet available
df1b2normgam.cpp	Description not yet available
df1b2normmix.cpp	Description not yet available
df1b2normmix2.cpp	Description not yet available
df1b2nv1.cpp	Description not yet available
df1b2pow.cpp	Description not yet available
df1b2prb.cpp	Description not yet available
df1b2prc.cpp	Description not yet available
df1b2prd.cpp	Description not yet available
df1b2ptr.cpp	Description not yet available
df1b2qnm.cpp	Description not yet available
df1b2sum.cpp	Description not yet available
df1b2sumc.cpp	Description not yet available
df1b2tweak.cpp	Description not yet available
df32fun.cpp	Description not yet available
df32fun.h	Description not yet available
df32fun1.cpp	Description not yet available
df33fun.cpp
df33fun.h	Description not yet available
df33fun1.cpp	Description not yet available
df3fun.cpp
df3fun.h
df3gammp.cpp
df_file.cpp
df_file2.cpp	Description not yet available
dfadcif.cpp	Member functions for class cifstream
dfgammp.cpp	$Id$
dfinvcumdt.cpp	Description not yet available
dflocmin.cpp	Description not yet available
dflogistic.cpp	Description not yet available
dfpool.cpp	Description not yet available
dfpool.h	Description not yet available
dfqromb.cpp	Member functions for class function_minimzer
dfsdmat.cpp	Description not yet available
dftweak.cpp	Description not yet available
dgamma.cpp	Gamma density functions
dinvgamma.cpp	Inverse gamma distribution
dlnorm.cpp	Lognormal density functions
dmat.cpp
dmat0.cpp
dmat1.cpp
dmat10.cpp
dmat12.cpp
dmat14.cpp
dmat15.cpp	Description not yet available
dmat16.cpp	Description not yet available
dmat17.cpp
dmat18.cpp
dmat2.cpp
dmat20.cpp	Math functions for dmatrix to compute cos, exp, log, pow, sin, sqr, sqrt, tan, elem_div and elem_prod
dmat21.cpp	Description not yet available
dmat22.cpp
dmat23.cpp	Description not yet available
dmat24.cpp
dmat25.cpp	Description not yet available
dmat26.cpp	Description not yet available
dmat27.cpp
dmat28.cpp	Description not yet available
dmat29.cpp	Description not yet available
dmat3.cpp
dmat30.cpp	Description not yet available
dmat31.cpp
dmat32.cpp	Description not yet available
dmat33.cpp	Description not yet available
dmat34.cpp
dmat35.cpp	Description not yet available
dmat36.cpp	Description not yet available
dmat37.cpp	Description not yet available
dmat38.cpp
dmat4.cpp
dmat41.cpp	Description not yet available
dmat42.cpp	This file deals with the Singular Value Decomposition of a matrix
dmat43.cpp
dmat6.cpp
dmat7.cpp
dmat8.cpp	Description not yet available
dmat9.cpp	Description not yet available
dmat_a.cpp	Description not yet available
dmat_acc.cpp	Description not yet available
dmat_io.cpp	Description not yet available
dmat_io2.cpp	Description not yet available
dmat_io3.cpp
dmsort.cpp	Description not yet available
dmultinom.cpp	Multinomial distribution
dmvlogistic.cpp	Multivariate logistic negative log likelihood
dnbinom.cpp
dnbinom_tau.cpp
dnorm.cpp	Normal density functions
doublind.cpp	Description not yet available
dpois.cpp	Poisson density functions
drancau.cpp	Description not yet available
drangam.cpp	Description not yet available
drannegbin.cpp	Description not yet available
dranpois.cpp	Description not yet available
dsize.cpp	Description not yet available
dtweedie.cpp
dunif.cpp	Uniform distribution
dvar.cpp	Function to compute sigmoid
dvec_acc.cpp	Safe member functions for dvector to get the element of a vector
dvec_dif.cpp	Function to compute first_difference
dvec_io1.cpp	Description not yet available
dvec_io2.cpp	Description not yet available
dvect10.cpp
dvect11.cpp	Description not yet available
dvect12.cpp
dvect13.cpp
dvect14.cpp	Description not yet available
dvect15.cpp
dvect16.cpp
dvect17.cpp
dvect18.cpp
dvect19.cpp	Description not yet available
dvect2.cpp	Description not yet available
dvect20.cpp	Description not yet available
dvect21.cpp
dvect22.cpp	Description not yet available
dvect23.cpp	Description not yet available
dvect24.cpp
dvect25.cpp	Description not yet available
dvect26.cpp	Description not yet available
dvect3.cpp
dvect4.cpp	Description not yet available
dvect5.cpp
dvect6.cpp
dvect7.cpp	Description not yet available
dvect8.cpp	Description not yet available
dvect9.cpp
dvect_io.cpp	Description not yet available
dvector.cpp	Description not yet available
dvector.h
dveigen.cpp
dveigenv.cpp
dvsort.cpp	Has routines for sorting a dvector
dvsort2.cpp
dzinbinom.cpp
ecolib.h
eigen.cpp
eigenv.cpp
eplogis.cpp	// Exponential logistic
except.cpp	Description not yet available
linad99/expm.cpp	Matrix exponential function for dvar_matrix
df1b2-separable/expm.cpp	Matrix exponential function for df1b2_matrix
f1b23d1.cpp	Description not yet available
f1b2fnl2.cpp	Description not yet available
f1b2fnl3.cpp	Description not yet available
f1b2fnl4.cpp	Description not yet available
f1b2fnl5.cpp	Description not yet available
f1b2fnl6.cpp	Description not yet available
f1b2lapqd.cpp	Description not yet available
f1b2lndt.cpp
f1b2ma1.cpp	Description not yet available
f1b2sol2.cpp
f1b2sol3.cpp	Description not yet available
f1b2solv.cpp
f1b2trst.cpp	Description not yet available
f1b2v10.cpp	Description not yet available
f1b2v11.cpp
f1b2v12.cpp	Description not yet available
f1b2vc1.cpp	Description not yet available
f1b2vc11.cpp
f1b2vc2.cpp	Description not yet available
f1b2vc3.cpp	Description not yet available
f1b2vc4.cpp	Description not yet available
f1b2vc5.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
f1b2vc6.cpp	Description not yet available
f1b2vc7.cpp	Description not yet available
f1b2vc8.cpp	Description not yet available
f1b2vc9.cpp	Description not yet available
f2c.h	Description not yet available
f3arr.cpp	Description not yet available
f3arr1.cpp	Description not yet available
f3arr10.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
f3arr11.cpp	Description not yet available
f3arr12.cpp	Description not yet available
f3arr13.cpp	Assignment functions for dvar3_array for d3_array and double
f3arr14.cpp	Assignment function dvar3_array::operator=(const dvar3_array&)
f3arr15.cpp	Description not yet available
f3arr16.cpp	Description not yet available
f3arr17.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
f3arr18.cpp	Description not yet available
f3arr19.cpp	Description not yet available
f3arr2.cpp	Description not yet available
f3arr3.cpp
f3arr4.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
f3arr5.cpp	Description not yet available
f3arr6.cpp
f3arr7.cpp
f3arr8.cpp
f3arr9.cpp	Description not yet available
f4_io.cpp
f4_io1.cpp
f4arr.cpp
f4arr1.cpp	Description not yet available
f4arr2.cpp	Description not yet available
f4arr3.cpp	Description not yet available
f5arr.cpp
f5arr1.cpp	Description not yet available
f5arr2.cpp	Description not yet available
f5arr3.cpp	Description not yet available
f6arr.cpp	Description not yet available
f6arr1.cpp	Description not yet available
f6arr2.cpp	Description not yet available
f7arr.cpp	Description not yet available
f7arr1.cpp	Description not yet available
f7arr2.cpp	Description not yet available
factors.cpp	Support functions for factor
factors.h	Support functions for factor
fill.cpp	Fills a matrix with a vectorThis function fills a matrix m with a vector v
fmm.cpp	Description not yet available
fmm_cont.cpp	Description not yet available
fmm_disp.cpp	Description not yet available
fmmt1.cpp	Description not yet available
fmmtr1.cpp	Description not yet available
fquadpri.cpp
franpois.cpp	Description not yet available
ftweak.cpp	Description not yet available
fvar.hpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
fvar1.cpp	Description not yet available
fvar2.cpp	Description not yet available
fvar3_io.cpp	I/o operations for class dmatrix
fvar_a10.cpp	Description not yet available
fvar_a11.cpp	Functions for dvar_vector to find max(const dvar_vector&) and min(const dvar_vector&)
fvar_a13.cpp	Description not yet available
fvar_a14.cpp	Dot-product fpor dvar_vector and sum for dvar_vector and dvar_matrix
fvar_a15.cpp	Description not yet available
fvar_a16.cpp	Description not yet available
fvar_a17.cpp	Description not yet available
fvar_a18.cpp	Description not yet available
fvar_a19.cpp	Description not yet available
fvar_a20.cpp	Assignment operators for dvar_vector for types dvar_vector, prevariable and double
fvar_a21.cpp	Description not yet available
fvar_a22.cpp	Description not yet available
fvar_a23.cpp	Description not yet available
fvar_a24.cpp	Description not yet available
fvar_a25.cpp	Description not yet available
fvar_a26.cpp	Description not yet available
fvar_a27.cpp	Description not yet available
fvar_a28.cpp
fvar_a29.cpp	Functions for dvar_vector to compute sin, ..
fvar_a30.cpp	Unary functions for dvar_vector operator-= and operator+=
fvar_a31.cpp	Description not yet available
fvar_a32.cpp	Description not yet available
fvar_a33.cpp	Description not yet available
fvar_a34.cpp	AD Function operator/(const dvar_vector&, const double)
fvar_a35.cpp	Description not yet available
fvar_a36.cpp	Description not yet available
fvar_a37.cpp	Description not yet available
fvar_a38.cpp	Description not yet available
fvar_a39.cpp	Function operator-(const dvar_vector&, const double)
fvar_a40.cpp	Description not yet available
fvar_a41.cpp	Description not yet available
fvar_a42.cpp	Description not yet available
fvar_a43.cpp	Description not yet available
fvar_a44.cpp	Description not yet available
fvar_a45.cpp	Description not yet available
fvar_a46.cpp	Member functions dvar_vector::elem_div for various types
fvar_a47.cpp	Description not yet available
fvar_a48.cpp	Description not yet available
fvar_a49.cpp	Description not yet available
fvar_a50.cpp	Description not yet available
fvar_a51.cpp	Description not yet available
fvar_a52.cpp
fvar_a53.cpp	Description not yet available
fvar_a54.cpp	Description not yet available
fvar_a55.cpp	Description not yet available
fvar_a56.cpp	Description not yet available
fvar_a57.cpp	Description not yet available
fvar_a58.cpp
fvar_a59.cpp
fvar_a60.cpp	Description not yet available
fvar_a61.cpp	Description not yet available
fvar_a62.cpp	Description not yet available
fvar_ar1.cpp
fvar_ar3.cpp	Description not yet available
fvar_ar7.cpp	Description not yet available
fvar_ar8.cpp	Description not yet available
fvar_arr.cpp	Description not yet available
fvar_dif.cpp
fvar_fn.cpp	Overloads of math library functions for variable arguments
fvar_fn1.cpp	More overloads of math library functions for variable arguments
fvar_fn2.cpp	Description not yet available
fvar_io.cpp	Description not yet available
fvar_io2.cpp	Description not yet available
fvar_m10.cpp	Description not yet available
fvar_m11.cpp	Description not yet available
fvar_m12.cpp	Description not yet available
fvar_m13.cpp	Description not yet available
fvar_m14.cpp	Description not yet available
fvar_m15.cpp
fvar_m18.cpp	Description not yet available
fvar_m19.cpp	Description not yet available
fvar_m20.cpp
fvar_m21.cpp	Description not yet available
fvar_m22.cpp	Description not yet available
fvar_m23.cpp	Description not yet available
fvar_m24.cpp
fvar_m27.cpp	Description not yet available
fvar_m28.cpp	Description not yet available
fvar_m29.cpp	Author: David Fournier Copyright (c) 2008-2012 Regents of the University of California
fvar_m30.cpp	Description not yet available
fvar_m31.cpp	Description not yet available
fvar_m32.cpp	Description not yet available
fvar_m33.cpp	Description not yet available
fvar_m34.cpp	Description not yet available
fvar_m35.cpp	Description not yet available
fvar_m36.cpp	Description not yet available
fvar_m37.cpp
fvar_m38.cpp	Description not yet available
fvar_m39.cpp	Description not yet available
fvar_m40.cpp	Description not yet available
fvar_m41.cpp	Description not yet available
fvar_m42.cpp
fvar_m43.cpp	Description not yet available
fvar_m44.cpp	Description not yet available
fvar_m45.cpp
fvar_m46.cpp	Description not yet available
fvar_m47.cpp	Description not yet available
fvar_m48.cpp	Description not yet available
fvar_m50.cpp	Description not yet available
fvar_m51.cpp	Description not yet available
fvar_m52.cpp	Description not yet available
fvar_m53.cpp	Description not yet available
fvar_m57.cpp	Description not yet available
fvar_ma1.cpp	Description not yet available
fvar_ma2.cpp	Description not yet available
fvar_ma3.cpp	Description not yet available
fvar_ma4.cpp
fvar_ma6.cpp	Functions for empirical_covariance and outer_prod
fvar_ma7.cpp	Description not yet available
fvar_ma8.cpp	Description not yet available
fvar_ma9.cpp	Description not yet available
fvar_mat.cpp
fvar_o10.cpp	Description not yet available
fvar_o11.cpp	Description not yet available
fvar_op2.cpp	Description not yet available
fvar_op3.cpp	Description not yet available
fvar_op4.cpp	Description not yet available
fvar_op5.cpp	Prevariable operations
fvar_op7.cpp
fvar_op8.cpp	Functions for prevariable to compute cube(const prevariable&) and fourth(const prevariable&)
fvar_op9.cpp	Description not yet available
fvar_opr.cpp	Overloads of arithmetic operators for variable arguments
fvara_io.cpp	Description not yet available
fvarb_io.cpp	Description not yet available
fvarm1_i.cpp	I/o operations for class dvar_matrix
fvarm_io.cpp	Description not yet available
fvma_acc.cpp	Description not yet available
gammdev.cpp	Description not yet available
gaussher.cpp	This file has routines used for Gauss-Hermite Quadrature and Gauss-Legendre Quadrature
gdbprintlib.cpp	Source code for functions for printing ADMB objects during GDB sessions
gdbprintlib.h	Function prototypes for printing ADMB objects during GDB sessions
generalized_Ricker1.cpp
generalized_Ricker2.cpp
getbigs.cpp	Function function_minimizer::get_bigS
getopt.cpp	Description not yet available
Gompertz.cpp
gradchk.cpp	Description not yet available
gradient_structure.h
gradstak.cpp	Description not yet available
gradstrc.cpp	Description not yet available
gs_set.cpp	Functions for setting memory allocation and array limits
gsl_ran_gamma.cpp
gst_read.cpp	Description not yet available
Hassell.cpp
Hill.cpp
histgram.cpp	Description not yet available
hmc.cpp	This file was copied from hybmcmc.cpp to use as a template to create updated Hamiltonian Monte Carlo samplers (static HMC and No-u-turn)
hmc_functions.cpp
HollingII.cpp
HollingIII.cpp
HollingIV.cpp
hs_sparse.cpp
humung.cpp	Description not yet available
hybmcmc.cpp	Function function_minimizer::hybrid_mcmc_routine
i3_io.cpp
i3arr.cpp
i3arr8.cpp
i4arr.cpp
i4io.cpp
i5arr.cpp
i5io.cpp
imat.cpp
imat1.cpp	Description not yet available
imat10.cpp
imat2.cpp
imat3.cpp	Description not yet available
imat4.cpp
imat5.cpp
imat6.cpp
imat7.cpp
imat8.cpp
imat9.cpp	Description not yet available
imat_a.cpp
imat_io.cpp	Description not yet available
imatrix.h
imsort.cpp	Description not yet available
indextyp.cpp	Description not yet available
integrate.cpp
integrate.hpp
integrate_wrap.hpp
linad99/invlogit.cpp	Inverse logit function
df1b2-separable/invlogit.cpp	Invlogit function
ivec.cpp
ivec2.cpp	Description not yet available
ivec3.cpp
ivec4.cpp	Description not yet available
ivec7.cpp
ivec8.cpp
ivec9.cpp
ivec_io1.cpp
ivect10.cpp
ivect11.cpp
ivect6.cpp	Contains ivector sum and pow functions
ivect_io.cpp	I/o operations for class ivector
ivector.cpp	Description not yet available
ivector.h
ivsort.cpp	Has routines for sorting an ivector
ivsort2.cpp
jacob2.cpp	Description not yet available
jacob3.cpp	Description not yet available
jacobclc.cpp	Description not yet available
lbfgs.cpp	Author: Jorge Nodecal Copyright (c) 2009-2012 ADMB Foundation
libtype.cpp	Function which_library()
lmat.cpp	Description not yet available
lmat1.cpp	Description not yet available
lmat2.cpp	Description not yet available
lmat3.cpp	Description not yet available
lmat4.cpp	Description not yet available
lmat5.cpp	Description not yet available
lmat6.cpp	Description not yet available
lmat7.cpp	Description not yet available
lmat_a.cpp	Description not yet available
lmat_io.cpp	Description not yet available
lmnewton.cpp	Function function_minimizer::limited_memory_quasi_newton
statslib/logistic.cpp
ecolib/logistic.cpp
logistic3.cpp
logisticK.cpp
logit.cpp	Description not yet available
lvec1.cpp	Description not yet available
lvec2.cpp	Description not yet available
lvec_io1.cpp	Description not yet available
lvect_io.cpp	Description not yet available
lvector.cpp	Description not yet available
makesub.cpp	Description not yet available
maxmin.cpp	Description not yet available
mc_scale.cpp
mceval.cpp	Function function_minimizer::mcmc_eval
mfexp.cpp
mfexpcon.cpp
mfupper.cpp	Description not yet available
Michaelis_Menten1.cpp
Michaelis_Menten2.cpp
minim.cpp
mod_hess.cpp
mod_mc.cpp	Function function_minimizer::monte_carlo_routine
mod_mc1.cpp
mod_mc2.cpp
mod_mc3.cpp
mod_mc4.cpp	Function function_minimizer::get_monte_carlo_value
mod_pmin.cpp
mod_prof.cpp
mod_rhes.cpp	Description not yet available
mod_sd.cpp
model.cpp
model10.cpp
model11.cpp
model12.cpp
model13.cpp
model14.cpp	Member functions for likeprof_params
model15.cpp
model15i.cpp
model16.cpp
model17.cpp
model19.cpp
model2.cpp
model20.cpp
model21.cpp
model22.cpp	Function named_dvar3_array::allocate
model23.cpp
model24.cpp
model26.cpp
model27.cpp
model28.cpp
model29.cpp
model3.cpp
model30.cpp
model31.cpp
model32.cpp
model33.cpp
model34.cpp
model35.cpp
model36.cpp
model37.cpp
model4.cpp
model40.cpp
model41.cpp
model42.cpp
model43.cpp
model44.cpp
model45.cpp
model46.cpp
model47.cpp
model48.cpp
model49.cpp	Description not yet available
model5.cpp
model50.cpp
model51.cpp
model52.cpp
model53.cpp
model53x.cpp
model6.cpp
model7.cpp
model8.cpp
model9.cpp
modhdet.cpp
modspmin.cpp
monomolecular.cpp
monte.cpp
montebds.cpp
multifan.cpp	/Robust normal approximation to the multinomial distribution
multiindex.cpp	Description not yet available
newdar.cpp
newfmin.cpp	Source code for quasi-Newton function minimizer
newhand.cpp
newmodm2.cpp	Member functions projected_hess_determinant,iget_particular_grad, prof_minimize for class function_minimizer
newmodm3.cpp	Functions get_onesided_intervals and get_confidence_interval
newmodm4.cpp	Function function_minimizer::unrestricted_hess_determinant
newmodm5.cpp	Function function_minimizer::prof_minimize_re
newmodmn.cpp
newreg2.cpp	Description not yet available
nmonte.cpp
nnewmod2.cpp
nonrectangular_hyperbola.cpp
normmix.cpp	Description not yet available
normmix2.cpp	Description not yet available
nuts.cpp	The no-U-turn sampler (NUTS) MCMC routine
nvarcall.cpp	Description not yet available
optmatch.cpp	Option_match utilities used for parsing command line arguments
orthply2.cpp	Description not yet available
orthpoly.cpp	Description not yet available
output_checks.cpp
param_init_bounded_number_matrix.cpp
param_init_bounded_number_matrix.h
pearsonresiduals.cpp	// Pearson residuals
posfunc.cpp	Posfun(...) source code for constant arguments
posfunv.cpp	Posfun(...) source code for variable arguments
pow_vectorized_RE.cpp
prmonte.cpp
prn_t.h
ptr2.cpp	Description not yet available
ptr_vec.cpp	Description not yet available
qfc_est.cpp	Negative log likelihood functions with other functions useful for model estimation
qfc_sim.cpp	Functions useful for simulation model in admb
qfclib.h
qsort.h	Header for qsort
quadpri.cpp	Description not yet available
randeff.cpp
ranf_ni.cpp	Description not yet available
ranf_ni2.cpp	Description not yet available
ranfill.cpp	Description not yet available
ranfill1.cpp	Routines for filling objects (matrices and vectors)
ranfill2.cpp	Description not yet available
rannegbn.cpp	Description not yet available
Ricker.cpp
rmvlogistic.cpp	Random multivariate logistic negative log likelihood
rngen.cpp	Description not yet available
rwm.cpp
scbound.cpp	Description not yet available
scbound1.cpp	Description not yet available
sdmat.cpp	Description not yet available
set.cpp	Description not yet available
setin.cpp	Description not yet available
sgradclc.cpp	Functions to compute gradient from the global gradient_structure
shape.cpp	Description not yet available
shared.cpp
shared1.cpp
Shepherd.cpp
signalh.cpp	Description not yet available
size.cpp
statsLib.h	Library of statistic functions
str.cpp	Functions for str
str_aio.cpp	Input and output functions for types adstring_array
strcase.cpp	Functions for adstring used to_lower and to_upper
strcase2.cpp	Functions for adstring_array used to_lower and to_upper
string.cpp	Member functions for adstring
string1.cpp	Member functions for class adstring
string2.cpp	Member function for class adstring
string2a.cpp	Member functions for class line_adstring
string3.cpp	Member functions for class adstring
string4.cpp	Input operators for adstring and line_adstring
string5.cpp	Member functions for class adstring_array
string5a.cpp	Member functions append_distinct and operator+= for class adstring_array
string6.cpp	Utility functions for adstring
studentT.cpp	Student T density functions
suballoc.cpp
tdev.cpp	Description not yet available
tensprod.cpp	Description not yet available
test_trust.cpp	Description not yet available
theta_logistic.cpp
timer.cpp	Description not yet available
tiny_ad.hpp
tiny_vec.hpp
tiny_wrap.hpp
tsdfpool.cpp	Description not yet available
tweedie_logW.cpp
ufstream.cpp	Description not yet available
v_ghk.cpp	Functions
val.cpp	Functions val(const adstring&, int&, int&) and val(const adstring&)
vbessel.cpp	Description not yet available
vbeta.cpp	Function beta(const prevariable&,const prevariable&)
vbetacf.cpp	Function betacf(const dvariable&, const dvariable&, const dvariable&, int MAXIT)
vbetai.cpp	Functions betai(const dvariable, const dvariable, const dvariable, int) and wrapper pbeta(const dvariable, const dvariable, const dvariable, int)
vbetdev.cpp	Function beta_deviate(const prevariable&, const prevariable&, const prevariable&, double)
vbivnorm.cpp	Description not yet available
vcubicspline.cpp	Cubic spline functions
vcumdbetainv.cpp
vcumdcau.cpp	Functions cumd_cauchy(const prevariable&), kludge_cumd_cauchy(const prevariable&) and inv_cumd_cauchy(const prevariable&)
vcumdexp.cpp	Functions inv_cumd_exponential(const prevariable&) and cumd_exponential(const prevariable&)
vcumdist.cpp	Description not yet available
vcumdlog.cpp	Functions cumd_logistic(const prevariable&) and inv_cumd_logistic(const prevariable&)
vec_io.cpp
vector_shapex.h
Vectorize.hpp	Macros to do vectorization
linad99/vgamdens.cpp
df1b2-separable/vgamdens.cpp
vgamdev.cpp
vinvcumdt.cpp	Function inv_cumd_t(const prevariable&, const prevariable&, double)
vnegbin.cpp	Poisson and negative binomial probability density functions for differentiable objects
vnorlogmix.cpp	Functions robust_normal_logistic_mixture_deviate(const prevariable&, double) and robust_normal_mixture_deviate(const prevariable&, double)
vnormgam.cpp	Function norm_to_gamma(const prevariable&, const prevariable&, double)
vrannegbin.cpp	Function dvar_vector::fill_randnegbinomial
vregress.cpp	Function regression(const dvector&, const dvar_vector&)
vspline.cpp	Contains routines for cubic spline interpolation for variable types
vtdev.cpp	Function t_deviate(const prevariable&,const prevariable&)
xfmmtr1.cpp
xgradclc.cpp	Description not yet available
xmodelm3.cpp
xmodelm4.cpp
xmodelm5.cpp
xmonte2.cpp
xxmcmc.cpp