qfc_sim.cpp File Reference

(Last Changed on August 05, 2016 for git-revision 4e745c3fbad754bf4e3e0f177718316ae86def06.)

functions useful for simulation model in admb More...

#include "qfclib.h"

Go to the source code of this file.

Namespaces
	qfclib

Functions
bool	doubleEqual (double nVal1, double nVal2, int nPrecision)
	determine if two double values are equal within some precision More...
dmatrix	findValFromFile (adstring filename, adstring varName, int numVals)
	find the number of values(numVals) for one specific variable(varName) from an admb output file More...
dvector	matrix2vector (const dmatrix &input, int byrow=1)
	convert the matrix as a vector eithter by row=1(default) or by column=0, More...
dvar_vector	matrix2vector (const dvar_matrix &input, int byrow=1)
	convert the matrix as a vector eithter by row=1(default) or by column=0, overloading function More...
df1b2vector	matrix2vector (const df1b2matrix &input, int byrow=1)
	convert the matrix as a vector eithter by row=1(default) or by column=0, overloading function More...
int	numRows4VarFromFile (adstring filename, adstring varName)
	get how many rows for one specific variable(varName) in admb output file(filename) More...
double	rbeta (double alpha, double beta, random_number_generator &rng)
	generate random beta(alpha, beta) number, More...
dvector	rdirichlet (const dvector &shape, random_number_generator &rng)
	generate random dirichlet number More...
double	qfclib::rgamma (double alpha, random_number_generator &rng)
	generate random gamma number, pseudo code see http://en.wikipedia.org/wiki/Gamma_distribution , Gamma(alpha, belta)=x^(alpha-1)*belta^alpha*exp(-belta*x)/gamma(alpha) More...
double	rgamma (double alpha, random_number_generator &rng)
	Copyright (c) 2016 ADMB Foundation. More...
double	rgamma (double alpha, double beta, random_number_generator &rng)
	generate random gamma number, mean is alpha/belta, variance is alpha/(belta^2) More...
double	rlnorm (double mu, double sigma, random_number_generator &rng)
	generate one random lognormal number LN(mu,sigma) More...
double	rnorm (double mu, double sigma, random_number_generator &rng)
	generate one random normal number N(mu,sigma) More...
double	runif (double low, double upper, random_number_generator &rng)
	generate one random uniform from (low,upper) More...
ivector	sample (const dvector &source, int nSample, int withReplace, const random_number_generator &rng)
	generate a random sample index(size is nSample) based on the input samples(source) with or without replacement More...
dvector	unique (const dvector &in)
	find the unique values from input vector and only return the unique (by remove the duplicate) values in ascending order More...
dmatrix	vector2matrix (dvector &input, int nrow, int ncol, int byrow=1)
	convert the Vector as a Matrix eithter by row=1(default) or by column=0, More...
df1b2matrix	vector2matrix (df1b2vector &input, int nrow, int ncol, int byrow=1)
	convert the Vector as a Matrix eithter by row=1(default) or by column=0, overloading function More...
dvar_matrix	vector2matrix (const dvar_vector &input, int nrow, int ncol, int byrow=1)
	convert the Vector as a Matrix eithter by row=1(default) or by column=0, overloading function More...

Detailed Description

functions useful for simulation model in admb

Date

7/28/2011

Author

Weihai Liu

Following user defined functions are more useful for doing simulation model in admb, the easy way to use these functions is with your tpl file under the GLOBALS_SECTION , add a line on top as #include "qfclib.h", there is a testfunction.tpl file within this folder show how to use these functions.

================ brief list for usage ============================

1. return some values for the specific variable name in admb ouput file, such as find the parameter value and its std value from .std file, use findValFromFile("test.std","linf",2), see findValFromFile()
   
2. doing random sampling with or without replacement, see sample()
   
3. remove the duplicate values from a vector, see unique()
   
4. several random number generator, runif(), rnorm(), rgamma(), rdirichlet()
   
5. round your matrix, vector, sclar to some specific decimals for display in report_section, such as round(dmatrix,4), see round()
   
6. convert vector to matrix by row or by column or its reverse form, see matrix2vector(), vector2matrix()
   =============================================================
   found any bug , contact Weihai Liu at liuwe.nosp@m.ih@m.nosp@m.su.ed.nosp@m.u
   Quantitative Fisheries Center(QFC), Michigan State University
   

Definition in file qfc_sim.cpp.