| active_flag | initial_params | protected |
| add_random_vector(const dvector &x) | initial_params | static |
| add_random_vector(const dvector &y, const dvector &x, const double &ll, const dvector &diag) | initial_params | static |
| add_to_list(void) | initial_params | virtual |
| add_value(const dvector &, const dvector &, const int &, const double &, const dvector &) | param_init_matrix | virtual |
| add_value(const dvector &, const int &) | param_init_matrix | virtual |
| allocate(int rmin, int rmax, int cmin, int cmax, int phase_start=1, const char *="UNNAMED") | param_init_matrix | |
| allocate(int rmin, int rmax, int cmin, int cmax, const char *="UNNAMED") | param_init_matrix | |
| allocate(const ad_integer &imin, const ad_integer &imax, const index_type &imin2, const index_type &imax2, const ad_integer &phase_start, const char *s) | param_init_matrix | |
| allocate(const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, const char *="UNNAMED") | param_init_matrix | |
| allocate(const ad_integer &rmin, const ad_integer &rmax, const index_type &cmin, const index_type &cmax, int phase_start=1, const char *="UNNAMED") | param_init_matrix | |
| named_dvar_matrix::allocate(int rmin, int rmax, const char *s) | named_dvar_matrix | |
| named_dvar_matrix::allocate(const char *s) | named_dvar_matrix | |
| named_dvar_matrix::allocate(int rmin, int rmax, const index_type &cmin, const index_type &cmax, const char *s) | named_dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(int nrl, int nrh, int ncl, int nch) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(int nrl, int nrh) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(ad_integer nrl, ad_integer nrh) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(const dmatrix &m1) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(const dvar_matrix &m1) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(int nrl, int nrh, const ivector &ncl, const ivector &nch) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(int nrl, int nrh, int ncl, const ivector &nch) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(int nrl, int nrh, const ivector &ncl, int nch) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(void) | dvar_matrix | |
| named_dvar_matrix::dvar_matrix::allocate(const ad_integer &nrl, const ad_integer &nrh, const index_type &ncl, const index_type &nch) | dvar_matrix | |
| initial_params::allocate(int _phase_start) | initial_params | |
| bsave_value(uostream &uos) | param_init_matrix | virtual |
| colfill(int j, const dvar_vector &v) | dvar_matrix | |
| colfill_randn(const int &j, long int &n) | dvar_matrix | |
| colfill_randn_ni(const int &j, long int &n) | dvar_matrix | |
| colfill_randu(const int &j, long int &n) | dvar_matrix | |
| colfill_randu_ni(const int &j, long int &n) | dvar_matrix | |
| colfill_seqadd(const int &, double, double) | dvar_matrix | |
| colfill_seqadd_ni(const int &, double, double) | dvar_matrix | |
| colmax(void) const | dvar_matrix | inline |
| colmin(void) const | dvar_matrix | inline |
| colshift(int min) | dvar_matrix | |
| colsize() const | dvar_matrix | inline |
| copy_all_values(const dvector &x, const int &ii) | initial_params | static |
| copy_value_to_vector(const dvector &x, const int &ii) | param_init_matrix | virtual |
| correct_for_dev_objects(const dmatrix &H) | initial_params | static |
| current_phase | initial_params | static |
| curv_scale(const dvector &d, const dvector &x, const int &) | param_init_matrix | virtual |
| deallocate() | dvar_matrix | |
| dev_correction(const dmatrix &, const int &) | param_init_matrix | privatevirtual |
| dvar_matrix() | dvar_matrix | |
| dvar_matrix(const banded_symmetric_dvar_matrix &v) | dvar_matrix | |
| dvar_matrix(const banded_lower_triangular_dvar_matrix &v) | dvar_matrix | |
| dvar_matrix(const param_init_vector_vector &) | dvar_matrix | |
| dvar_matrix(const param_init_bounded_vector_vector &) | dvar_matrix | |
| dvar_matrix(const param_init_bounded_number_matrix &) | dvar_matrix | |
| dvar_matrix(const ad_integer &nrl, const ad_integer &nrh, const index_type &ncl, const index_type &nch) | dvar_matrix | |
| dvar_matrix(int, int, int, int) | dvar_matrix | |
| dvar_matrix(int, int) | dvar_matrix | |
| dvar_matrix(int, int, kkludge_object kk) | dvar_matrix | |
| dvar_matrix(int, int, const ivector &, const ivector &) | dvar_matrix | |
| dvar_matrix(int, int, int, const ivector &) | dvar_matrix | |
| dvar_matrix(const dvar_matrix &) | dvar_matrix | |
| dvar_matrix(const dmatrix &) | dvar_matrix | |
| elem(int i) | dvar_matrix | inline |
| elem(int i, int j) | dvar_matrix | inline |
| elem(int i) const | dvar_matrix | inline |
| elem(int i, int j) const | dvar_matrix | inline |
| elem_value(int i, int j) | dvar_matrix | inline |
| elem_value(int i, int j) const | dvar_matrix | inline |
| fill(const char *) | dvar_matrix | |
| fill_randn(long int &n) | dvar_matrix | |
| fill_randn_ni(long int &n) | dvar_matrix | |
| fill_randu(long int &n) | dvar_matrix | |
| fill_randu_ni(long int &n) | dvar_matrix | |
| fill_seqadd(double, double) | dvar_matrix | |
| get_initial_value(void) | initial_params | |
| get_jacobian(const dvector &, const dvector &, const int &) | param_init_matrix | virtual |
| get_jacobian_value(const dvector &y, const dvector &jac) | initial_params | static |
| get_name(void) | model_name_tag | inline |
| get_ncopies() const | dvar_matrix | inline |
| get_phase_start(void) | initial_params | |
| get_reportfile_name(void) | initial_params | static |
| get_scalefactor() | initial_params | |
| hess_scale(const dvector &, const dvector &, const int &) | param_init_matrix | inlinevirtual |
| in_hessian_phase | initial_params | static |
| indexmax(void) const | dvar_matrix | inline |
| indexmin(void) const | dvar_matrix | inline |
| initial_params(void) | initial_params | |
| initial_value | initial_params | protected |
| initial_value_flag | initial_params | protected |
| initialize(void) | dvar_matrix | |
| label(void) | param_init_matrix | virtual |
| max_num_initial_params | initial_params | static |
| max_number_phases | initial_params | static |
| mc_phase | initial_params | static |
| mc_scale(const dvector &d, const dvector &x, const int &) | param_init_matrix | virtual |
| mceval_phase | initial_params | static |
| model_name_tag(void) | model_name_tag | inline |
| montecarlo_scale(const dvector &d, const dvector &x) | initial_params | static |
| name | model_name_tag | protected |
| named_dvar_matrix(void) | named_dvar_matrix | inline |
| num_active_calc(void) | initial_params | static |
| num_active_initial_params | initial_params | static |
| num_initial_params | initial_params | static |
| nvarcalc() | initial_params | static |
| nvarcalc_all(void) | initial_params | static |
| operator!(void) const | dvar_matrix | inline |
| operator()(int i) | dvar_matrix | inline |
| operator()(int i) const | dvar_matrix | inline |
| operator()(int i, int j) | dvar_matrix | inline |
| operator()(int i, int j) const | dvar_matrix | inline |
| operator*=(const prevariable &t) | dvar_matrix | |
| operator*=(double t) | dvar_matrix | |
| operator++(void) | dvar_matrix | inline |
| operator+=(const dvar_matrix &x) | dvar_matrix | |
| operator+=(const dmatrix &x) | dvar_matrix | |
| operator--(void) | dvar_matrix | inline |
| operator-=(const dvar_matrix &x) | dvar_matrix | |
| operator-=(const dmatrix &x) | dvar_matrix | |
| operator/=(const prevariable &t) | dvar_matrix | |
| operator/=(double t) | dvar_matrix | |
| operator=(const dmatrix &m) | param_init_matrix | |
| operator=(const dvar_matrix &m) | param_init_matrix | |
| operator=(const dvariable &m) | param_init_matrix | |
| operator=(const double &m) | param_init_matrix | |
| named_dvar_matrix::operator=(const double m) | named_dvar_matrix | |
| dvar_matrix::operator=(const prevariable &t) | dvar_matrix | |
| operator[](int) | dvar_matrix | inline |
| operator[](int) const | dvar_matrix | inline |
| param_init_matrix(void) | param_init_matrix | |
| phase_save | initial_params | |
| phase_start | initial_params | |
| phase_stop | initial_params | |
| pvm_pack(void) | param_init_matrix | inlineprivatevirtual |
| pvm_unpack(void) | param_init_matrix | inlineprivatevirtual |
| read(void) | initial_params | static |
| read_from(const istream &) | dvar_matrix | |
| read_from(const uistream &) | dvar_matrix | |
| report_value(void) | param_init_matrix | |
| reset(const dvar_vector &x) | initial_params | static |
| reset(const dvector &x) | initial_params | static |
| reset(const dvar_vector &x, const dvector &pen) | initial_params | static |
| reset1(const dvar_vector &x, const dvector &g) | initial_params | static |
| reset_all(const dvar_vector &x, const dvector &pen) | initial_params | static |
| restart_phase | initial_params | static |
| restore(const ifstream &ifs) | initial_params | static |
| restore_all_values(const dvector &x, const int &ii) | initial_params | static |
| restore_phase_start(void) | initial_params | |
| restore_start_phase(void) | initial_params | static |
| restore_value(const ifstream &ifs) | param_init_matrix | virtual |
| restore_value_from_vector(const dvector &, const int &) | param_init_matrix | virtual |
| rowfill(int j, const dvar_vector &v) | dvar_matrix | |
| rowfill_randn(const int &i, long int &n) | dvar_matrix | |
| rowfill_randn_ni(const int &i, long int &n) | dvar_matrix | |
| rowfill_randu(const int &i, long int &n) | dvar_matrix | |
| rowfill_randu_ni(const int &i, long int &n) | dvar_matrix | |
| rowfill_seqadd(const int &, double, double) | dvar_matrix | |
| rowmax(void) const | dvar_matrix | inline |
| rowmin(void) const | dvar_matrix | inline |
| rowshift(int min) | dvar_matrix | |
| rowsize() const | dvar_matrix | inline |
| save(void) | initial_params | static |
| save(const ofstream &ofs, int prec) | initial_params | static |
| save_all(const ofstream &_ofs, int prec, const dvector &g) | initial_params | static |
| save_dvar_matrix_position() const | dvar_matrix | |
| save_dvar_matrix_value() const | dvar_matrix | |
| save_value(ofstream &ofs) | param_init_matrix | virtual |
| save_value(const ofstream &ofs, int prec, const dvector &, int &offset) | param_init_matrix | virtual |
| save_value(const ofstream &ofs, int prec) | param_init_matrix | virtual |
| scalefactor | initial_params | protected |
| sd_phase | initial_params | static |
| sd_scale(const dvector &d, const dvector &x, const int &ii) | param_init_matrix | virtual |
| sd_vscale(const dvar_vector &d, const dvar_vector &x, const int &ii) | param_init_matrix | virtual |
| set_active_flag(void) | initial_params | |
| set_active_only_random_effects(void) | initial_params | static |
| set_active_random_effects(void) | initial_params | static |
| set_all_simulation_bounds(const dmatrix &symbds) | initial_params | static |
| set_all_simulation_bounds(const dmatrix &symbds, const dvector &) | initial_params | static |
| set_inactive_flag(void) | initial_params | |
| set_inactive_only_random_effects(void) | initial_params | static |
| set_inactive_random_effects(void) | initial_params | static |
| set_initial_value(double x) | initial_params | |
| set_only_random_effects_active() | initial_params | virtual |
| set_only_random_effects_inactive() | initial_params | virtual |
| set_phase_start(int x) | initial_params | |
| set_random_effects_active() | initial_params | virtual |
| set_random_effects_inactive() | initial_params | virtual |
| set_scalefactor(const double) | initial_params | |
| set_simulation_bounds(const dmatrix &symbds, const int &ii) | param_init_matrix | privatevirtual |
| set_value(const dvar_vector &x, const int &ii, const dvariable &pen) | param_init_matrix | virtual |
| set_value_inv(const dvector &x, const int &ii) | param_init_matrix | virtual |
| setshare(const index_type &sf, const index_type &af) | param_init_matrix | virtual |
| shallow_copy(const dvar_matrix &) | dvar_matrix | |
| share_flags | initial_params | protected |
| shared_set_value(const dvar_vector &, const int &, const dvariable &pen) | param_init_matrix | privatevirtual |
| shared_set_value_inv(const dvector &x, const int &ii) | param_init_matrix | privatevirtual |
| shared_size_count(void) | param_init_matrix | privatevirtual |
| size_count() const | param_init_matrix | virtual |
| stddev_curvscale(const dvector &d, const dvector &x) | initial_params | static |
| stddev_scale(const dvector &d, const dvector &x) | initial_params | static |
| stddev_vscale(const dvar_vector &d, const dvar_vector &x) | initial_params | static |
| straight_through_flag | initial_params | static |
| sub(int, int) | dvar_matrix | |
| varsptr | initial_params | static |
| write_on(const ostream &) const | dvar_matrix | |
| write_on(const uostream &) const | dvar_matrix | |
| xinit(const dvector &x) | initial_params | static |
| xinit1(const dvector &x, const dvector &g) | initial_params | static |
| xinit_all(const dvector &x) | initial_params | static |
| ~dvar_matrix() | dvar_matrix | |
| ~initial_params() | initial_params | protectedvirtual |
1.8.5