| active_flag | initial_params | protected |
| add_random_vector(const dvector &x) | initial_params | static |
| add_random_vector(const dvector &y, const dvector &x, const double &ll, const dvector &diag) | initial_params | static |
| add_to_list(void) | initial_params | virtual |
| add_value(const dvector &, const dvector &, const int &, const double &, const dvector &) | param_init_d3array | virtual |
| add_value(const dvector &, const int &) | param_init_d3array | virtual |
| allocate(const ad_integer &sl, const ad_integer &sh, const index_type &nrl, const index_type &nrh, const index_type &ncl, const index_type &nch, const char *s="UNNAMED") | param_init_d3array | |
| allocate(const ad_integer &sl, const ad_integer &sh, const index_type &nrl, const index_type &nrh, const index_type &ncl, const index_type &nch, int phase_start=1, const char *s="UNNAMED") | param_init_d3array | |
| allocate(int smin, int smax, int rmin, int rmax, int cmin, int cmax, int phase_start=1, const char *="UNNAMED") | param_init_d3array | |
| allocate(int smin, int smax, int rmin, int rmax, int cmin, int cmax, const char *="UNNAMED") | param_init_d3array | |
| named_dvar3_array::allocate(int hsl, int hsu, int rmin, int rmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, const index_type &rmin, const index_type &rmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, const ivector &rmin, int rmax, int cmin, int cmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, int rmin, const ivector &rmax, int cmin, int cmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, const ivector &rmin, const ivector &rmax, int cmin, int cmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, int rmin, int rmax, const ivector &cmin, int cmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, int rmin, int rmax, const ivector &cmin, const ivector &cmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::allocate(int hsl, int hsu, int rmin, int rmax, int cmin, const ivector &cmax, const char *s="UNNAMED") | named_dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, int nrh, int ncl, int nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, int nrh) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, const index_type &nrl, const index_type &nrh) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, int nrh, const ivector &ncl, int nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(const d3_array &m1) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(void) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(const dvar3_array &m1) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, int nrh, const ivector &ncl, const ivector &nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, const ivector &nrl, const ivector &nrh, const ivector &ncl, const ivector &nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, const ivector &nrl, const ivector &nrh, int ncl, int nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, const ivector &nrl, int nrh, int ncl, int nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, const ivector &nrh, int ncl, int nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, const ivector &nrh, int ncl, const ivector &nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(int sl, int sh, int nrl, int nrh, int ncl, const ivector &nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(ad_integer sl, ad_integer sh, const index_type &nrl, const index_type &nrh, const index_type &ncl, const index_type &nch) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(ad_integer sl, ad_integer sh, const index_type &nrl, const index_type &nrh) | dvar3_array | |
| named_dvar3_array::dvar3_array::allocate(ad_integer sl, ad_integer sh) | dvar3_array | |
| initial_params::allocate(int _phase_start) | initial_params | |
| bsave_value(uostream &uos) | param_init_d3array | virtual |
| colmax(void) const | dvar3_array | inline |
| colmin() const | dvar3_array | inline |
| colsize() const | dvar3_array | inline |
| copy_all_values(const dvector &x, const int &ii) | initial_params | static |
| copy_value_to_vector(const dvector &x, const int &ii) | param_init_d3array | virtual |
| correct_for_dev_objects(const dmatrix &H) | initial_params | static |
| current_phase | initial_params | static |
| curv_scale(const dvector &d, const dvector &x, const int &ii) | param_init_d3array | virtual |
| deallocate() | dvar3_array | |
| dev_correction(const dmatrix &, const int &) | param_init_d3array | virtual |
| dvar3_array(int, int) | dvar3_array | |
| dvar3_array(int sl, int sh, int nrl, int nrh, int ncl, int nch) | dvar3_array | |
| dvar3_array(int sl, int sh, int nrl, int nrh, const ivector &ncl, int nch) | dvar3_array | |
| dvar3_array(int sl, int sh, const ivector &nrl, const ivector &nrh, ivector &ncl, const ivector &nch) | dvar3_array | |
| dvar3_array(int sl, int sh, int nrl, const ivector &nrh, int ncl, const ivector &nch) | dvar3_array | |
| dvar3_array(int sl, int sh, int nrl, const ivector &nrh, int ncl, int nch) | dvar3_array | |
| dvar3_array(ad_integer sl, ad_integer sh, const index_type &nrl, const index_type &nrh, const index_type &ncl, const index_type &nch) | dvar3_array | |
| dvar3_array(const d3_array &m2) | dvar3_array | |
| dvar3_array(const param_init_matrix_vector &m2) | dvar3_array | |
| dvar3_array(const param_init_bounded_matrix_vector &m2) | dvar3_array | |
| dvar3_array(const dvar3_array &m2) | dvar3_array | |
| dvar3_array(void) | dvar3_array | |
| elem(int i) | dvar3_array | inline |
| elem(int i, int j, int k) | dvar3_array | inline |
| elem(int i) const | dvar3_array | inline |
| elem(int i, int j, int k) const | dvar3_array | inline |
| fill_randn(long int &n) | dvar3_array | |
| fill_randn_ni(long int &n) | dvar3_array | |
| fill_randu(long int &n) | dvar3_array | |
| fill_randu_ni(long int &n) | dvar3_array | |
| fill_seqadd(double, double) | dvar3_array | |
| get_initial_value(void) | initial_params | |
| get_jacobian(const dvector &, const dvector &, const int &) | param_init_d3array | virtual |
| get_jacobian_value(const dvector &y, const dvector &jac) | initial_params | static |
| get_name(void) | model_name_tag | inline |
| get_ncopies() const | dvar3_array | inline |
| get_phase_start(void) | initial_params | |
| get_reportfile_name(void) | initial_params | static |
| get_scalefactor() | initial_params | |
| hess_scale(const dvector &d, const dvector &x, const int &ii) | param_init_d3array | virtual |
| in_hessian_phase | initial_params | static |
| indexmax() const | dvar3_array | inline |
| indexmin() const | dvar3_array | inline |
| initial_params(void) | initial_params | |
| initial_value | initial_params | protected |
| initial_value_flag | initial_params | protected |
| initialize(void) | dvar3_array | |
| label(void) | param_init_d3array | virtual |
| max_num_initial_params | initial_params | static |
| max_number_phases | initial_params | static |
| mc_phase | initial_params | static |
| mc_scale(const dvector &d, const dvector &x, const int &) | param_init_d3array | virtual |
| mceval_phase | initial_params | static |
| model_name_tag(void) | model_name_tag | inline |
| montecarlo_scale(const dvector &d, const dvector &x) | initial_params | static |
| name | model_name_tag | protected |
| named_dvar3_array(void) | named_dvar3_array | inline |
| num_active_calc(void) | initial_params | static |
| num_active_initial_params | initial_params | static |
| num_initial_params | initial_params | static |
| nvarcalc() | initial_params | static |
| nvarcalc_all(void) | initial_params | static |
| operator!(void) const | dvar3_array | inline |
| operator()(int k, int i, int j) const | dvar3_array | inline |
| operator()(int k, int i) const | dvar3_array | inline |
| operator()(int i) const | dvar3_array | inline |
| operator()(int k, int i, int j) | dvar3_array | inline |
| operator()(int k, int i) | dvar3_array | inline |
| operator()(int i) | dvar3_array | inline |
| operator/=(const prevariable &) | dvar3_array | |
| operator/=(double) | dvar3_array | |
| operator=(const dvar3_array &m) | named_dvar3_array | |
| operator=(const d3_array &m) | named_dvar3_array | |
| dvar3_array::operator=(double x) | dvar3_array | |
| operator[](int i) const | dvar3_array | inline |
| operator[](int i) | dvar3_array | inline |
| param_init_d3array(void) | param_init_d3array | |
| phase_save | initial_params | |
| phase_start | initial_params | |
| phase_stop | initial_params | |
| pvm_pack(void) | param_init_d3array | inlinevirtual |
| pvm_unpack(void) | param_init_d3array | inlinevirtual |
| read(void) | initial_params | static |
| report_value(void) | param_init_d3array | |
| reset(const dvar_vector &x) | initial_params | static |
| reset(const dvector &x) | initial_params | static |
| reset(const dvar_vector &x, const dvector &pen) | initial_params | static |
| reset1(const dvar_vector &x, const dvector &g) | initial_params | static |
| reset_all(const dvar_vector &x, const dvector &pen) | initial_params | static |
| restart_phase | initial_params | static |
| restore(const ifstream &ifs) | initial_params | static |
| restore_all_values(const dvector &x, const int &ii) | initial_params | static |
| restore_phase_start(void) | initial_params | |
| restore_start_phase(void) | initial_params | static |
| restore_value(const ifstream &ifs) | param_init_d3array | virtual |
| restore_value_from_vector(const dvector &, const int &) | param_init_d3array | virtual |
| rowmax(void) const | dvar3_array | inline |
| rowmin(void) const | dvar3_array | inline |
| rowsize() const | dvar3_array | inline |
| save(void) | initial_params | static |
| save(const ofstream &ofs, int prec) | initial_params | static |
| save_all(const ofstream &_ofs, int prec, const dvector &g) | initial_params | static |
| save_value(ofstream &ofs) | param_init_d3array | virtual |
| save_value(const ofstream &ofs, int prec) | param_init_d3array | virtual |
| save_value(const ofstream &ofs, int prec, const dvector &, int &offset) | param_init_d3array | inlinevirtual |
| scalefactor | initial_params | protected |
| sd_phase | initial_params | static |
| sd_scale(const dvector &d, const dvector &x, const int &ii) | param_init_d3array | virtual |
| sd_vscale(const dvar_vector &d, const dvar_vector &x, const int &ii) | param_init_d3array | virtual |
| set_active_flag(void) | initial_params | |
| set_active_only_random_effects(void) | initial_params | static |
| set_active_random_effects(void) | initial_params | static |
| set_all_simulation_bounds(const dmatrix &symbds) | initial_params | static |
| set_all_simulation_bounds(const dmatrix &symbds, const dvector &) | initial_params | static |
| set_inactive_flag(void) | initial_params | |
| set_inactive_only_random_effects(void) | initial_params | static |
| set_inactive_random_effects(void) | initial_params | static |
| set_initial_value(double x) | initial_params | |
| set_only_random_effects_active() | initial_params | virtual |
| set_only_random_effects_inactive() | initial_params | virtual |
| set_phase_start(int x) | initial_params | |
| set_random_effects_active() | initial_params | virtual |
| set_random_effects_inactive() | initial_params | virtual |
| set_scalefactor(const double) | initial_params | |
| set_simulation_bounds(const dmatrix &symbds, const int &ii) | param_init_d3array | virtual |
| set_value(const dvar_vector &x, const int &ii, const dvariable &pen) | param_init_d3array | virtual |
| set_value_inv(const dvector &x, const int &ii) | param_init_d3array | virtual |
| setshare(const index_type &sf, const index_type &af) | param_init_d3array | virtual |
| shallow_copy(const dvar3_array &) | dvar3_array | |
| share_flags | initial_params | protected |
| shared_set_value(const dvar_vector &, const int &, const dvariable &pen) | param_init_d3array | virtual |
| shared_set_value_inv(const dvector &, const int &) | param_init_d3array | virtual |
| shared_size_count(void) | param_init_d3array | virtual |
| size_count() const | param_init_d3array | virtual |
| slicemax() const | dvar3_array | inline |
| slicemin() const | dvar3_array | inline |
| slicesize() const | dvar3_array | inline |
| stddev_curvscale(const dvector &d, const dvector &x) | initial_params | static |
| stddev_scale(const dvector &d, const dvector &x) | initial_params | static |
| stddev_vscale(const dvar_vector &d, const dvar_vector &x) | initial_params | static |
| straight_through_flag | initial_params | static |
| sub(int, int) | dvar3_array | |
| value(const dvar3_array &) | dvar3_array | |
| varsptr | initial_params | static |
| xinit(const dvector &x) | initial_params | static |
| xinit1(const dvector &x, const dvector &g) | initial_params | static |
| xinit_all(const dvector &x) | initial_params | static |
| ~dvar3_array() | dvar3_array | |
| ~initial_params() | initial_params | protectedvirtual |