| _hessian | function_minimizer | private |
| _hessian_inverse | function_minimizer | private |
| _ln_det_value | function_minimizer | private |
| AD_uf_inner() | function_minimizer | virtual |
| AD_uf_outer() | function_minimizer | virtual |
| adamoeba(const dmatrix &p, const dvector &y, int ndim, double ftol, int maxfn) | function_minimizer | |
| adapt_eps(int ii, int iseps, double eps, double alpha, double &adapt_delta, double &mu, dvector &epsvec, dvector &epsbar, dvector &Hbar) | function_minimizer | |
| add_sample_dense(const int nvar, int &is2, dvector &m, dmatrix &m2, const independent_variables &q) | function_minimizer | |
| add_sample_diag(const int nvar, int &n, dvector &m, dvector &m2, const independent_variables &q) | function_minimizer | |
| adromb(_func func, double a, double b, int ns=9) | function_minimizer | |
| adromb(_func func, const dvariable &a, double b, int ns=9) | function_minimizer | |
| adromb(_func func, const dvariable &a, const dvariable &b, int ns=9) | function_minimizer | |
| adromb(_func func, double a, const dvariable &b, int ns=9) | function_minimizer | |
| adrombo(_func func, double a, double b, int ns=9) | function_minimizer | |
| adrombo(_func func, const dvariable &a, double b, int ns=9) | function_minimizer | |
| adrombo(_func func, const dvariable &a, const dvariable &b, int ns=9) | function_minimizer | |
| adrombo(_func func, double a, const dvariable &b, int ns=9) | function_minimizer | |
| allocate() | function_minimizer | inlinevirtual |
| amxxx(const dmatrix &p, const dvector &y, const dvector &psum, int ndim, int ihi, double fac) | function_minimizer | |
| bad_step_flag | function_minimizer | static |
| begin_df1b2_funnel(void) | function_minimizer | inline |
| begin_funnel_stuff(void) | function_minimizer | |
| begin_gauss_hermite_stuff(void) | function_minimizer | |
| between_phases_calculations(void) | function_minimizer | inlinevirtual |
| build_tree(int nvar, dvector &gr, dmatrix &chd, double eps, dvector &p, dvector &y, dvector &gr2, double logu, int v, int j, double H0, dvector &_thetaprime, dvector &_thetaplus, dvector &_thetaminus, dvector &_rplus, dvector &_rminus, double &_alphaprime, int &_nalphaprime, bool &_sprime, int &_nprime, int &_nfevals, bool &_divergent, const random_number_generator &rng, dvector &gr2_end, dvector &_grprime, dvector &_gr2prime, double &_nllprime, double &_Hprime, independent_variables &_parsaveprime) | function_minimizer | |
| calculate_chd_and_inverse(int nvar, const dmatrix &metric, dmatrix &chd, dmatrix &chdinv) | function_minimizer | |
| choleski_decomp_hmc(const dmatrix &metric, dmatrix &L) | function_minimizer | |
| computations(int argc, char *argv[]) | function_minimizer | |
| computations(void) | function_minimizer | |
| computations1(int argc, char *argv[]) | function_minimizer | |
| computations_np(int argc, char *argv[]) | function_minimizer | |
| compute_next_window(int i, int warmup, int w1, int aws, int w3) | function_minimizer | |
| constrained_minimization2(int _n, int _nh, int _ng, dvector &__x) | function_minimizer | |
| constraint_exit_number | function_minimizer | static |
| constraint_report(void) | function_minimizer | |
| constraints_minimize(void) | function_minimizer | virtual |
| convergence_criteria | function_minimizer | protectedstatic |
| crit | function_minimizer | |
| deallocate() | function_minimizer | inlinevirtual |
| dep_hess_routine(const dvariable &dep) | function_minimizer | |
| depvars_routine(void) | function_minimizer | |
| dfn | function_minimizer | |
| diag_hess_routine(void) | function_minimizer | |
| diag_projected_hess_determinant(const dvector &g, const int underflow_flag, dmatrix &dh) | function_minimizer | |
| diagonal_metric_flag | function_minimizer | |
| do_gauss_hermite_integration(void) | function_minimizer | |
| do_gauss_hermite_integration_multi(void) | function_minimizer | private |
| ef_(double *f, double *x) | function_minimizer | |
| end_df1b2_funnel(void) | function_minimizer | inline |
| end_df1b2_funnel_stuff(void) | function_minimizer | |
| end_gauss_hermite_stuff(void) | function_minimizer | |
| end_get_importance_sampling_comnponent(void) | function_minimizer | |
| equality_constraint_vector class | function_minimizer | friend |
| exprnd(double p) | function_minimizer | |
| ffbest | function_minimizer | protected |
| final_calcs(void) | function_minimizer | inlinevirtual |
| find_reasonable_stepsize(int nvar, dvector y, dvector p, dmatrix &chd, bool verbose_adapt_mass, bool verbose_find_epsilon, int chain) | function_minimizer | |
| first_hessian_flag | function_minimizer | static |
| function_evaluation_block_pvm_slave(void) | function_minimizer | |
| function_evaluation_block_pvm_slave_random_effects(int nvar, int _crit, independent_variables &x, const dvector &g, const double &f) | function_minimizer | |
| function_evaluation_block_pvm_slave_random_effects(void) | function_minimizer | |
| function_minimizer(long int sz=0L) | function_minimizer | |
| get_bigS(int ndvar, int nvar1, int nvar, dmatrix &S, dmatrix &BS, dvector &scale) | function_minimizer | |
| get_filename(const char *f) | function_minimizer | |
| get_function_difference(void) | function_minimizer | |
| get_hessian() | function_minimizer | inline |
| get_hessian_inverse() | function_minimizer | inline |
| get_hybrid_monte_carlo_value(int nvar, const independent_variables &y, dvector &g) | function_minimizer | |
| get_ln_det_value() const | function_minimizer | inline |
| get_monte_carlo_value(int nvar, const independent_variables &x) | function_minimizer | |
| get_monte_carlo_value(int nvar, const independent_variables &x, dvector &g) | function_minimizer | |
| get_monte_carlo_value(int nvar, const dvector &x) | function_minimizer | |
| get_particular_grad(int iprof, int nvar, const dvector &fg, const dvector &g) | function_minimizer | |
| have_constraints | function_minimizer | protectedstatic |
| hess_determinant(int underflow_flag) | function_minimizer | |
| hess_inv() | function_minimizer | |
| hess_routine(void) | function_minimizer | |
| hess_routine_and_constraint(int iprof, const dvector &g, dvector &fg) | function_minimizer | |
| hess_routine_master(void) | function_minimizer | |
| hess_routine_noparallel(void) | function_minimizer | |
| hess_routine_noparallel_random_effects(void) | function_minimizer | |
| hess_routine_noparallel_randomeffects(void) | function_minimizer | |
| hess_routine_random_effects(void) | function_minimizer | |
| hess_routine_slave(void) | function_minimizer | |
| hess_routine_slave_random_effects(void) | function_minimizer | |
| hess_step() | function_minimizer | |
| hybrid_mcmc_routine(int, int, double, int) | function_minimizer | |
| iexit | function_minimizer | |
| ifn | function_minimizer | |
| ihang | function_minimizer | |
| ihflag | function_minimizer | |
| imax | function_minimizer | |
| inequality_constraint_vector class | function_minimizer | friend |
| inner_opt(void) | function_minimizer | static |
| inner_opt_flag | function_minimizer | static |
| iprint | function_minimizer | |
| lapprox | function_minimizer | |
| leapfrog(int nvar, dvector &gr, dmatrix &chd, double eps, dvector &p, dvector &x, dvector &gr2) | function_minimizer | |
| likeprof_flag | function_minimizer | static |
| likeprof_routine(double global_min) | function_minimizer | |
| limited_memory_quasi_newton(const independent_variables &, int) | function_minimizer | |
| limited_memory_quasi_newton(const independent_variables &, int, int) | function_minimizer | |
| limited_memory_quasi_newton(double &f, const independent_variables &, int, int, int, double) | function_minimizer | |
| limited_memory_quasi_newton_block(int nvar, int _crit, independent_variables &x, const dvector &_g, const double &_f, int nsteps) | function_minimizer | |
| maxfn | function_minimizer | |
| maxfn_flag | function_minimizer | |
| maximum_function_evaluations | function_minimizer | protectedstatic |
| mcmc2_flag | function_minimizer | |
| mcmc_computations(void) | function_minimizer | |
| mcmc_eval(void) | function_minimizer | |
| mcmc_routine(int, int, double, int) | function_minimizer | |
| min_improve | function_minimizer | |
| minimize(void) | function_minimizer | virtual |
| monte_carlo_routine(void) | function_minimizer | |
| multinomial_weights | function_minimizer | |
| multint(int n, const dvar_vector &a, const dvar_vector &b, const dvar_vector &h, double al, int m, const dvariable &e, const dvariable &aint, const int &key, PMFVI f) | function_minimizer | |
| multint4(int n, const dvar_vector &a, const dvar_vector &b, const dvar_vector &h, double al, int m, const dvariable &e, const dvariable &aint1, const dvariable &aint2, dvariable &aint3, const dvariable &aint4, const int &key, PMFVIV4 f) | function_minimizer | |
| negative_eigenvalue_flag | function_minimizer | static |
| negdirections | function_minimizer | |
| neldmead(int n, dvector &_start, dvector &_xmin, double *ynewlo, double reqmin, double delta, int *icount, int *numres, int *ifault) | function_minimizer | |
| normalize_posterior_distribution(double udet, const dvector &siglevel, const ofstream &ofs2, int num_pp, const dvector &all_values, const dmatrix &actual_value, double global_min, int offset, const dmatrix &lprof, const dmatrix &ldet, const dmatrix &xdist, const dmatrix &penalties) | function_minimizer | |
| nuts_mcmc_routine(int, int, double, int) | function_minimizer | |
| other_calculations(void) | function_minimizer | inlinevirtual |
| other_separable_stuff_begin(void) | function_minimizer | |
| other_separable_stuff_end(void) | function_minimizer | |
| output_flag | function_minimizer | static |
| param_labels | function_minimizer | private |
| param_size | function_minimizer | private |
| pg | function_minimizer | static |
| pgs | function_minimizer | private |
| ph | function_minimizer | static |
| pre_user_function(void) | function_minimizer | |
| pre_userfunction(void) | function_minimizer | |
| print_mcmc_progress(int is, int nmcmc, int nwarmup, int chain, int refresh) | function_minimizer | |
| print_mcmc_timing(double time_warmup, double time_total, int chain) | function_minimizer | |
| prof_hess_routine(int ip, double new_value, double final_weight) | function_minimizer | |
| prof_minimize(int iprof, double sigma, double new_value, const double &fprof, const int underflow_flag, double global_min, const double &penalties, const double &final_weight) | function_minimizer | |
| prof_minimize_re(int iprof, double sigma, double new_value, const double &fprof, const int underflow_flag, double global_min, const double &penalties, const double &final_weight) | function_minimizer | |
| projected_hess_determinant(const dvector &g, const int underflow_flag, const dvector &xscale, const double &ln_det_proj_jac) | function_minimizer | |
| projected_hess_determinant(const dvector &g, const int underflow_flag) | function_minimizer | |
| projected_hess_determinant(const dmatrix &hh, const dvector &g, const int underflow_flag) | function_minimizer | |
| projected_hess_determinant(const dvector &fg, const dvector &g, const int underflow_flag, const dvector &curvscale, const dvector &xscale, double &ln_det_proj_jac, const double &tmp, const dmatrix &hesses) | function_minimizer | |
| projected_jacobian(const dvector &g, const dvector &xscale) | function_minimizer | |
| pvm_master_function_evaluation(double &f, independent_variables &x, const dvector &g, int nvar) | function_minimizer | |
| pvm_master_function_evaluation_no_derivatives(double &f, independent_variables &x, int nvar) | function_minimizer | |
| pvm_master_function_evaluation_profile(double &f, independent_variables &x, const dvector &g, int nvar, int iprof, double weight, double new_value) | function_minimizer | |
| pvm_master_get_monte_carlo_value(int nvar, const dvector &x) | function_minimizer | |
| pvm_master_mcmc_computations(void) | function_minimizer | |
| pvm_master_mcmc_routine(int nmcmc, int iseed0, double dscale, int restart_flag) | function_minimizer | |
| pvm_master_prof_minimize(int iprof, double sigma, double new_value, const double &_fprof, const int underflow_flag, double global_min, const double &_penalties, const double &_final_weight) | function_minimizer | |
| pvm_slave_function_evaluation(void) | function_minimizer | |
| pvm_slave_function_evaluation_no_derivatives(void) | function_minimizer | |
| pvm_slave_function_evaluation_noder(void) | function_minimizer | |
| pvm_slave_get_monte_carlo_value(int nvar) | function_minimizer | |
| pvm_slave_likeprof_routine(void) | function_minimizer | |
| pvm_slave_mcmc_computations(void) | function_minimizer | |
| pvm_slave_mcmc_routine(void) | function_minimizer | |
| pvm_slave_prof_minimize(int underflow_flag) | function_minimizer | |
| quasi_newton_block(int nvar, int crit, independent_variables &x, const dvector &g, const double &f) | function_minimizer | |
| quasi_newton_block_pvm_master(int nvar, int _crit, independent_variables &x, const dvector &g, const double &f) | function_minimizer | |
| quasi_newton_block_pvm_master_random_effects(int nvar, int _crit, independent_variables &x, const dvector &g, const double &f) | function_minimizer | |
| quasi_newton_minimizer1(int nvar, double _crit, double &f, const independent_variables &x, const dvector &g) | function_minimizer | |
| quit_flag | function_minimizer | |
| random_effects_flag | function_minimizer | static |
| random_effects_maximization(const dvar_vector &v) | function_minimizer | |
| read_mle_hmc(int nvar, dvector &mle) | function_minimizer | |
| repeatminflag | function_minimizer | |
| report(const dvector &gradients) | function_minimizer | inlineprotectedvirtual |
| report_function_minimizer_stats(void) | function_minimizer | inlineprotected |
| robust_hybrid_flag | function_minimizer | |
| rotate_gradient(const dvector &x, const dmatrix &m) | function_minimizer | |
| rotate_pars(const dvector &m, const dvector &x) | function_minimizer | |
| rotate_pars(const dmatrix &m, const dvector &x) | function_minimizer | |
| rwm_mcmc_routine(int, int, double, int) | function_minimizer | |
| scroll_flag | function_minimizer | |
| sd_flag | function_minimizer | protectedstatic |
| sd_routine(void) | function_minimizer | |
| set_initial_simplex(const dmatrix &p, const dvector &y, int nvar, const dvector &x, double delta) | function_minimizer | |
| set_multinomial_weights(dvector &d) | function_minimizer | |
| set_runtime(void) | function_minimizer | virtual |
| set_runtime_crit(const char *) | function_minimizer | virtual |
| set_runtime_maxfn(const char *) | function_minimizer | virtual |
| setup_quadprior_calcs(void) | function_minimizer | inline |
| sgibbs_mcmc_routine(int, int, double, int) | function_minimizer | |
| shmc_mcmc_routine(int, int, double, int) | function_minimizer | |
| slow_phase(int is, int warmup, int w1, int w3) | function_minimizer | |
| sob_routine(int nmcmc, double dscale, int restart_flag) | function_minimizer | |
| sobol_importance_routine(int nmcmc, int iseed0, double dscale, int restart_flag) | function_minimizer | |
| spminflag | function_minimizer | |
| start_get_importance_sampling_comnponent(void) | function_minimizer | |
| stop_criterion(int nvar, dvector &thetaminus, dvector &thetaplus, dvector &rminus, dvector &rplus) | function_minimizer | |
| test_trust_flag | function_minimizer | static |
| top_mcmc_routine(int, int, double, int) | function_minimizer | |
| trapzd(void *, double a, double b, int n) | function_minimizer | |
| trapzd(_func func, double a, double b, int n) | function_minimizer | |
| trapzd(_func func, double a, const dvariable &b, int n) | function_minimizer | |
| trapzd(_func func, const dvariable &a, double b, int n) | function_minimizer | |
| trapzd(_func func, const dvariable &a, const dvariable &b, int n) | function_minimizer | |
| trust_region_update(int nvar, int _crit, independent_variables &x, const dvector &_g, const double &_f) | function_minimizer | |
| unrestricted_hess_determinant(void) | function_minimizer | |
| user_d2frandeff(const dvar_vector &x) | function_minimizer | virtual |
| user_data_file | function_minimizer | protectedstatic |
| user_dfrandeff(const dvar_vector &x) | function_minimizer | virtual |
| user_function() | function_minimizer | virtual |
| user_par_file | function_minimizer | protectedstatic |
| user_randeff(const dvar_vector &x) | function_minimizer | virtual |
| userfunction(void)=0 | function_minimizer | pure virtual |
| ~function_minimizer() | function_minimizer | virtual |
1.8.5