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ADMB Documentation
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ADMB Documentation
-a65f1c97
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Description not yet available. More...
#include <limits>#include <vector>#include <fvar.hpp>#include <cifstrem.h>#include <adstring.hpp>#include <functional>#include "param_init_bounded_number_matrix.h"#include <Vectorize.hpp>Go to the source code of this file.
Classes | |
| class | AD_matherror |
| Description not yet available. More... | |
| class | adlist_ptr |
| For storing void pointers in a array. More... | |
| class | data_3array |
| Description not yet available. More... | |
| class | data_3iarray |
| class | data_4array |
| Description not yet available. More... | |
| class | data_4iarray |
| class | data_5array |
| class | data_6array |
| class | data_7array |
| class | data_adstring_array |
| class | data_imatrix |
| Description not yet available. More... | |
| class | data_int |
| Description not yet available. More... | |
| class | data_ivector |
| Description not yet available. More... | |
| class | data_matrix |
| Description not yet available. More... | |
| class | data_number |
| Description not yet available. More... | |
| class | data_vector |
| Description not yet available. More... | |
| class | dll_data_3array |
| Description not yet available. More... | |
| class | dll_data_int |
| Description not yet available. More... | |
| class | dll_data_matrix |
| Description not yet available. More... | |
| class | dll_data_number |
| Description not yet available. More... | |
| class | dll_data_vector |
| Description not yet available. More... | |
| class | dll_named_adstring |
| Description not yet available. More... | |
| class | dll_param_d3array |
| Description not yet available. More... | |
| class | dll_param_init_bounded_number |
| Description not yet available. More... | |
| class | dll_param_init_bounded_vector |
| Description not yet available. More... | |
| class | dll_param_init_d3array |
| Description not yet available. More... | |
| class | dll_param_init_matrix |
| Description not yet available. More... | |
| class | dll_param_init_number |
| Description not yet available. More... | |
| class | dll_param_init_vector |
| Description not yet available. More... | |
| class | dll_param_matrix |
| Description not yet available. More... | |
| class | dll_param_number |
| Description not yet available. More... | |
| class | dll_param_vector |
| Description not yet available. More... | |
| class | equality_constraint_vector |
| Description not yet available. More... | |
| class | function_minimizer |
| Description not yet available. More... | |
| class | inequality_constraint_vector |
| Description not yet available. More... | |
| class | init_adstring |
| Description not yet available. More... | |
| class | init_line_adstring |
| Description not yet available. More... | |
| class | initial_params |
| Description not yet available. More... | |
| class | label_class |
| Description not yet available. More... | |
| class | likeprof_params |
| Description not yet available. More... | |
| class | matrix_kludge |
| Description not yet available. More... | |
| class | model_name_tag |
| Description not yet available. More... | |
| class | named_adstring |
| Description not yet available. More... | |
| class | named_adstring_array |
| class | named_d3_array |
| Description not yet available. More... | |
| class | named_d4_array |
| Description not yet available. More... | |
| class | named_d5_array |
| Description not yet available. More... | |
| class | named_d6_array |
| Description not yet available. More... | |
| class | named_d7_array |
| Description not yet available. More... | |
| class | named_dmatrix |
| Description not yet available. More... | |
| class | named_dvar3_array |
| Description not yet available. More... | |
| class | named_dvar4_array |
| Description not yet available. More... | |
| class | named_dvar5_array |
| Description not yet available. More... | |
| class | named_dvar6_array |
| Description not yet available. More... | |
| class | named_dvar7_array |
| Description not yet available. More... | |
| class | named_dvar_matrix |
| Description not yet available. More... | |
| class | named_dvar_vector |
| Description not yet available. More... | |
| class | named_dvariable |
| Description not yet available. More... | |
| class | named_dvector |
| Description not yet available. More... | |
| class | named_i3_array |
| Description not yet available. More... | |
| class | named_i4_array |
| class | named_imatrix |
| Description not yet available. More... | |
| class | named_ivector |
| Description not yet available. More... | |
| class | named_line_adstring |
| Description not yet available. More... | |
| class | objective_function_value |
| Description not yet available. More... | |
| class | param_init_bounded_dev_vector |
| Description not yet available. More... | |
| class | param_init_bounded_matrix |
| Description not yet available. More... | |
| class | param_init_bounded_matrix_vector |
| Description not yet available. More... | |
| class | param_init_bounded_number |
| Description not yet available. More... | |
| class | param_init_bounded_number_vector |
| Class object for init_bounded_number vector. More... | |
| class | param_init_bounded_vector |
| Description not yet available. More... | |
| class | param_init_bounded_vector_vector |
| Description not yet available. More... | |
| class | param_init_d3array |
| Description not yet available. More... | |
| class | param_init_matrix |
| Description not yet available. More... | |
| class | param_init_matrix_vector |
| Description not yet available. More... | |
| class | param_init_number |
| Description not yet available. More... | |
| class | param_init_number_vector |
| Description not yet available. More... | |
| class | param_init_vector |
| Description not yet available. More... | |
| class | param_init_vector_vector |
| Description not yet available. More... | |
| class | param_likeprof_number |
| Description not yet available. More... | |
| class | param_stddev_matrix |
| Description not yet available. More... | |
| class | param_stddev_number |
| Description not yet available. More... | |
| class | param_stddev_vector |
| Description not yet available. More... | |
| class | pvm_int |
| Description not yet available. More... | |
| class | pvm_number |
| Description not yet available. More... | |
| class | pvm_params |
| Description not yet available. More... | |
| class | shareinfo |
| Description not yet available. More... | |
| class | stddev_params |
| Description not yet available. More... | |
| class | vector_kludge |
| Description not yet available. More... | |
Macros | |
| #define | __MINI_MAX__ |
| #define | param_3array named_dvar3_array |
| #define | param_4array named_dvar4_array |
| #define | param_5array named_dvar5_array |
| #define | param_6array named_dvar6_array |
| #define | param_7array named_dvar7_array |
| #define | param_matrix named_dvar_matrix |
| #define | param_number named_dvariable |
| #define | param_vector named_dvar_vector |
| #define | SPparam_3array SPnamed_dvar3_array |
| #define | SPparam_4array SPnamed_dvar4_array |
| #define | SPparam_matrix SPnamed_dvar_matrix |
| #define | SPparam_number SPnamed_dvariable |
| #define | SPparam_vector SPnamed_dvar_vector |
| #define | USE_SHARE_FLAGS |
Typedefs | |
| typedef std::function < dvariable(const dvariable &)> | _func |
| typedef initial_params * | pinitial_params |
| typedef dvariable(model_parameters::* | PMF )(const dvariable &) |
| typedef dvariable(model_parameters::* | PMFI )(const dvariable &, int n) |
| typedef dvariable(model_parameters::* | PMFVI )(const dvar_vector &, int n) |
| typedef void(model_parameters::* | PMFVIV4 )(const dvar_vector &, int n, dvariable &f1, const dvariable &f2, const dvariable &f3, const dvariable &f4) |
Functions | |
| int | ad_get_commandline_option (const char *option_label, const int &option_value, const char *error_message) |
| void | ad_make_code_reentrant (void) |
| void | adwait (double) |
| dvector | bounded_multivariate_normal (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &_wght, const random_number_generator &rng) |
| dvector | bounded_multivariate_normal (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &lprob, random_number_generator &rng) |
| void | bounded_multivariate_normal_mcmc (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &wght, const dvector &y, const random_number_generator &rng) |
| dvector | bounded_multivariate_normal_sobol (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &lprob, const random_number_generator &rng) |
| dvector | bounded_multivariate_uniform (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &lprob, random_number_generator &rng) |
| void | bounded_multivariate_uniform_mcmc (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &wght, const dvector &y, const random_number_generator &rng) |
| dvector | bounded_robust_multivariate_normal (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const dmatrix &ch3, double contaminant, const double &_wght, random_number_generator &rng) |
| void | check_datafile_pointer (void *p) |
| Exits if p is null. More... | |
| void | cleanup_argv (int nopt, char ***pa) |
| void | cleanup_laplace_stuff (laplace_approximation_calculator *) |
| Description not yet available. More... | |
| void | copy_value_from_vector (const double &_sd, const dvector &x, const int &_ii) |
| void | copy_value_from_vector (const dvector &_sd, const dvector &x, const int &_ii) |
| void | copy_value_from_vector (const dmatrix &_sd, const dvector &x, const int &_ii) |
| void | copy_value_to_vector (const prevariable &x, const dvector &v, const int &ii) |
| void | copy_value_to_vector (const dvar_vector &x, const dvector &v, const int &ii) |
| void | copy_value_to_vector (const dvar_matrix &x, const dvector &v, const int &ii) |
| void | copy_value_to_vector (const dvar3_array &x, const dvector &v, const int &ii) |
| double | cumd_cauchy (const double &x) |
| Description not yet available. More... | |
| double | cumd_exp (double x) |
| double | cumd_mixture (const double &x) |
| double | cumd_mixture_02 (const double &x) |
| double | density_cauchy (const double &x) |
| Description not yet available. More... | |
| void | do_dll_housekeeping (int argc, char **argv) |
| double | ffmax (double a, double b) |
| double | ffmin (double a, double b) |
| adstring | get_reportfile_name (void) |
| void | get_sp_printf (void) |
| double | inv_cumd_cauchy (const double &x) |
| Description not yet available. More... | |
| double | inv_cumd_exp (double x) |
| double | inv_cumd_mixture (const double &y) |
| double | inv_cumd_mixture_02 (const double &y) |
| double | log_density_cauchy (const double &x) |
| Description not yet available. More... | |
| double | mfexp (const double) |
| Robust exponential function for constant argument > 60 or < -60. More... | |
| dvariable | mfexp (const prevariable &v1) |
| Robust exponential function for variable argument > 60 or < -60. More... | |
| dvar_vector | mfexp (const dvar_vector &) |
| Description not yet available. More... | |
| dvector | mfexp (const dvector &) |
| Safe version of exp that interpolates values greater than equal to 60 in each element of a vector v1. More... | |
| double | ndfboundp (double x, double fmin, double fmax, const double &fpen) |
| Derivatative code for double nd2fboundp( double x, double fmin, double fmax,const double& fpen) More... | |
| double | ndfboundp_mc (double x, double fmin, double fmax, const double &fpen) |
| Description not yet available. More... | |
| char ** | no_dll_options (char *pname, const int &argc) |
| ostream & | operator<< (const ostream &s, const label_class &lc) |
| cifstream & | operator>> (const cifstream &s, const param_init_number &x) |
| cifstream & | operator>> (const cifstream &s, const param_init_vector &v) |
| cifstream & | operator>> (const cifstream &s, const param_init_matrix &m) |
| char ** | parse_dll_options (char *pname, const int &argc, char *dll_options) |
| void | parse_dll_options (char *pname, const int &argc, char *dll_options, char ***pargv) |
| dvector | probing_bounded_multivariate_normal (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &lprob, double pprobe, const random_number_generator &rng) |
| void | probing_bounded_multivariate_normal_mcmc (int nvar, const dvector &a1, const dvector &b1, dmatrix &ch, const double &wght, const dvector &v, double pprobe, const random_number_generator &rng) |
| void | pvm_pack (const dvar_vector &) |
| void | pvm_pack (const prevariable &) |
| void | pvm_pack (const dvar_matrix &) |
| void | pvm_unpack (const dvar_vector &) |
| void | pvm_unpack (const prevariable &) |
| void | pvm_unpack (const dvar_matrix &) |
| void | read_covariance_matrix (const dmatrix &S, int nvar, int &hbf, dvector &sscale) |
| dvector | read_old_scale (int &old_nvar) |
| void | restore_value_from_vector (const prevariable &x, const dvector &v, const int &ii) |
| void | restore_value_from_vector (const dvar_vector &x, const dvector &v, const int &ii) |
| void | restore_value_from_vector (const dvar_matrix &x, const dvector &v, const int &ii) |
| void | restore_value_from_vector (dvar3_array &x, const dvector &v, const int &ii) |
| void | set_covariance_matrix (const dll_data_matrix &m) |
| void | set_covariance_matrix (const dmatrix &m) |
| void | set_gauss_covariance_matrix (const dll_data_matrix &m) |
| void | set_gauss_covariance_matrix (const dmatrix &m) |
| double | set_value_inv_mc (double v, double fmin, double fmax) |
| double | set_value_inv_mc (const prevariable &v, double fmin, double fmax) |
| void | set_value_inv_mc (const dvar_vector &x, const dvector &v, const int &ii, const double fmin, const double fmax) |
| void | set_value_mc (const dvar_vector &x, const dvar_vector &v, const int &ii, const double fmin, const double fmax) |
| double | set_value_mc (double z, double min, double max) |
| void | tracing_message (int traceflag, const char *s, int *pn) |
| Description not yet available. More... | |
| void | tracing_message (int traceflag, const char *s, double *pn) |
| Description not yet available. More... | |
| dvector | value (const param_init_number_vector &t) |
| dvector | value (const param_init_bounded_number_vector &t) |
| int | withinbound (int lb, int n, int ub) |
Variables | |
| int | AD_gaussflag |
| int | ADqd_flag |
| function_minimizer * | pfm |
| int | traceflag |
Description not yet available.
Definition in file admodel.h.
| #define param_3array named_dvar3_array |
| #define param_4array named_dvar4_array |
| #define param_5array named_dvar5_array |
| #define param_6array named_dvar6_array |
| #define param_7array named_dvar7_array |
| #define param_matrix named_dvar_matrix |
| #define param_number named_dvariable |
| #define param_vector named_dvar_vector |
| typedef initial_params* pinitial_params |
| typedef dvariable(model_parameters::* PMFVI)(const dvar_vector &, int n) |
| typedef void(model_parameters::* PMFVIV4)(const dvar_vector &, int n, dvariable &f1, const dvariable &f2, const dvariable &f3, const dvariable &f4) |
| int ad_get_commandline_option | ( | const char * | option_label, |
| const int & | option_value, | ||
| const char * | error_message | ||
| ) |
| void ad_make_code_reentrant | ( | void | ) |
Definition at line 9 of file model33.cpp.
| void adwait | ( | double | ) |
Definition at line 42 of file model34.cpp.
| dvector bounded_multivariate_normal | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | _wght, | ||
| const random_number_generator & | rng | ||
| ) |
Referenced by function_minimizer::mcmc_routine(), and function_minimizer::rwm_mcmc_routine().
| dvector bounded_multivariate_normal | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | lprob, | ||
| random_number_generator & | rng | ||
| ) |
| void bounded_multivariate_normal_mcmc | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | wght, | ||
| const dvector & | y, | ||
| const random_number_generator & | rng | ||
| ) |
Definition at line 14 of file xmonte2.cpp.
Referenced by function_minimizer::mcmc_routine(), and function_minimizer::rwm_mcmc_routine().
| dvector bounded_multivariate_normal_sobol | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | lprob, | ||
| const random_number_generator & | rng | ||
| ) |
| dvector bounded_multivariate_uniform | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | lprob, | ||
| random_number_generator & | rng | ||
| ) |
Definition at line 216 of file monte.cpp.
Referenced by function_minimizer::mcmc_routine(), and function_minimizer::rwm_mcmc_routine().
| void bounded_multivariate_uniform_mcmc | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | wght, | ||
| const dvector & | y, | ||
| const random_number_generator & | rng | ||
| ) |
Definition at line 138 of file xmonte2.cpp.
Referenced by function_minimizer::mcmc_routine(), and function_minimizer::rwm_mcmc_routine().
| void check_datafile_pointer | ( | void * | p | ) |
Exits if p is null.
Definition at line 560 of file model.cpp.
Referenced by data_int::allocate(), init_adstring::allocate(), data_adstring_array::allocate(), init_line_adstring::allocate(), data_matrix::allocate(), data_3array::allocate(), data_3iarray::allocate(), data_imatrix::allocate(), data_vector::allocate(), data_ivector::allocate(), and data_number::allocate().
| void cleanup_argv | ( | int | nopt, |
| char *** | pa | ||
| ) |
Definition at line 124 of file model33.cpp.
| void cleanup_laplace_stuff | ( | laplace_approximation_calculator * | l | ) |
| void copy_value_from_vector | ( | const double & | _sd, |
| const dvector & | x, | ||
| const int & | _ii | ||
| ) |
Definition at line 9 of file model42.cpp.
Referenced by copy_value_from_vector(), param_stddev_vector::get_sd_values(), param_stddev_number::get_sd_values(), and param_stddev_matrix::get_sd_values().
Definition at line 16 of file model42.cpp.
Definition at line 26 of file model42.cpp.
| void copy_value_to_vector | ( | const prevariable & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 47 of file model3.cpp.
Referenced by copy_value_to_vector().
| void copy_value_to_vector | ( | const dvar_vector & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 55 of file model3.cpp.
| void copy_value_to_vector | ( | const dvar_matrix & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 77 of file model3.cpp.
| void copy_value_to_vector | ( | const dvar3_array & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 91 of file model3.cpp.
| double cumd_cauchy | ( | const double & | x | ) |
| double cumd_mixture | ( | const double & | x | ) |
Definition at line 529 of file nmonte.cpp.
Referenced by get_bounded_mixture().
| double cumd_mixture_02 | ( | const double & | x | ) |
Definition at line 517 of file nmonte.cpp.
| double density_cauchy | ( | const double & | x | ) |
| void do_dll_housekeeping | ( | int | argc, |
| char ** | argv | ||
| ) |
Definition at line 159 of file model33.cpp.
| double ffmax | ( | double | a, |
| double | b | ||
| ) |
Definition at line 14 of file monte.cpp.
Referenced by bounded_multivariate_uniform(), and bounded_multivariate_uniform_mcmc().
| double ffmin | ( | double | a, |
| double | b | ||
| ) |
Definition at line 19 of file monte.cpp.
Referenced by bounded_multivariate_uniform(), and bounded_multivariate_uniform_mcmc().
| adstring get_reportfile_name | ( | void | ) |
| void get_sp_printf | ( | void | ) |
Definition at line 149 of file model33.cpp.
Referenced by do_dll_housekeeping().
| double inv_cumd_cauchy | ( | const double & | x | ) |
| double inv_cumd_mixture | ( | const double & | y | ) |
Definition at line 556 of file nmonte.cpp.
Referenced by get_bounded_mixture(), and inv_cumd_mixture().
| double inv_cumd_mixture_02 | ( | const double & | y | ) |
Definition at line 609 of file nmonte.cpp.
Referenced by inv_cumd_mixture_02().
| double log_density_cauchy | ( | const double & | x | ) |
Description not yet available.
Definition at line 39 of file cumd_cau.cpp.
Referenced by bounded_multivariate_normal(), bounded_multivariate_normal_mcmc(), multivariate_mixture(), new_probing_bounded_multivariate_normal(), new_probing_bounded_multivariate_normal_mcmc(), probing_bounded_multivariate_normal(), and probing_bounded_multivariate_normal_mcmc().
| dvar_vector mfexp | ( | const dvar_vector & | v1 | ) |
Safe version of exp that interpolates values greater than equal to 60 in each element of a vector v1.
| v1 | a data vector |
Definition at line 49 of file dvect19.cpp.
| double ndfboundp | ( | double | x, |
| double | fmin, | ||
| double | fmax, | ||
| const double & | fpen | ||
| ) |
Derivatative code for double nd2fboundp( double x, double fmin, double fmax,const double& fpen)
| x | Variable to be scaled |
| fmin | Lower bound of x |
| fmin | Upper bound of x |
| fpen | Unchanged on return. |
Definition at line 210 of file boundfun.cpp.
Referenced by param_init_bounded_vector::mc_scale(), param_init_bounded_number::mc_scale(), param_init_bounded_matrix::mc_scale(), param_init_bounded_vector::sd_scale(), param_init_bounded_number::sd_scale(), param_init_bounded_matrix::sd_scale(), df1b2_init_bounded_number::sd_scale(), df1b2_init_bounded_vector::sd_scale(), and df1b2_init_bounded_matrix::sd_scale().
| double ndfboundp_mc | ( | double | x, |
| double | fmin, | ||
| double | fmax, | ||
| const double & | fpen | ||
| ) |
Description not yet available.
Definition at line 63 of file mc_scale.cpp.
Referenced by param_init_bounded_vector::mc_scale(), param_init_bounded_number::mc_scale(), param_init_bounded_matrix::mc_scale(), param_init_bounded_vector::sd_scale(), param_init_bounded_number::sd_scale(), df1b2_init_bounded_number::sd_scale(), and df1b2_init_bounded_vector::sd_scale().
| char** no_dll_options | ( | char * | pname, |
| const int & | argc | ||
| ) |
Definition at line 103 of file model33.cpp.
| ostream& operator<< | ( | const ostream & | s, |
| const label_class & | lc | ||
| ) |
Definition at line 43 of file model11.cpp.
| cifstream& operator>> | ( | const cifstream & | s, |
| const param_init_number & | x | ||
| ) |
Definition at line 11 of file model11.cpp.
| cifstream& operator>> | ( | const cifstream & | s, |
| const param_init_vector & | v | ||
| ) |
Definition at line 18 of file model11.cpp.
| cifstream& operator>> | ( | const cifstream & | s, |
| const param_init_matrix & | m | ||
| ) |
Definition at line 36 of file model11.cpp.
| char** parse_dll_options | ( | char * | pname, |
| const int & | argc, | ||
| char * | dll_options | ||
| ) |
Definition at line 443 of file model33.cpp.
| void parse_dll_options | ( | char * | pname, |
| const int & | argc, | ||
| char * | dll_options, | ||
| char *** | pargv | ||
| ) |
Definition at line 36 of file model33.cpp.
| dvector probing_bounded_multivariate_normal | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | lprob, | ||
| double | pprobe, | ||
| const random_number_generator & | rng | ||
| ) |
| void probing_bounded_multivariate_normal_mcmc | ( | int | nvar, |
| const dvector & | a1, | ||
| const dvector & | b1, | ||
| dmatrix & | ch, | ||
| const double & | wght, | ||
| const dvector & | v, | ||
| double | pprobe, | ||
| const random_number_generator & | rng | ||
| ) |
Definition at line 87 of file xmonte2.cpp.
| void pvm_pack | ( | const dvar_vector & | ) |
| void pvm_pack | ( | const prevariable & | ) |
| void pvm_pack | ( | const dvar_matrix & | ) |
| void pvm_unpack | ( | const dvar_vector & | ) |
| void pvm_unpack | ( | const prevariable & | ) |
| void pvm_unpack | ( | const dvar_matrix & | ) |
Definition at line 1320 of file xxmcmc.cpp.
Referenced by function_minimizer::hess_step(), function_minimizer::hybrid_mcmc_routine(), function_minimizer::mcmc_routine(), function_minimizer::nuts_mcmc_routine(), function_minimizer::rwm_mcmc_routine(), and function_minimizer::shmc_mcmc_routine().
| dvector read_old_scale | ( | int & | old_nvar | ) |
Definition at line 1667 of file xxmcmc.cpp.
Referenced by function_minimizer::hybrid_mcmc_routine().
| void restore_value_from_vector | ( | const prevariable & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 147 of file model3.cpp.
Referenced by restore_value_from_vector().
| void restore_value_from_vector | ( | const dvar_vector & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 156 of file model3.cpp.
| void restore_value_from_vector | ( | const dvar_matrix & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 177 of file model3.cpp.
| void restore_value_from_vector | ( | dvar3_array & | x, |
| const dvector & | v, | ||
| const int & | ii | ||
| ) |
Definition at line 193 of file model3.cpp.
| void set_covariance_matrix | ( | const dll_data_matrix & | m | ) |
Definition at line 30 of file mod_sd.cpp.
| void set_covariance_matrix | ( | const dmatrix & | m | ) |
Definition at line 35 of file mod_sd.cpp.
| void set_gauss_covariance_matrix | ( | const dll_data_matrix & | m | ) |
Definition at line 20 of file mod_sd.cpp.
| void set_gauss_covariance_matrix | ( | const dmatrix & | m | ) |
Definition at line 25 of file mod_sd.cpp.
| double set_value_inv_mc | ( | double | v, |
| double | fmin, | ||
| double | fmax | ||
| ) |
Definition at line 116 of file mod_mc3.cpp.
Referenced by param_init_bounded_number::mc_scale(), param_init_bounded_matrix::mc_scale(), param_init_bounded_vector::set_value_inv(), and set_value_inv_mc().
| double set_value_inv_mc | ( | const prevariable & | v, |
| double | fmin, | ||
| double | fmax | ||
| ) |
Definition at line 111 of file mod_mc3.cpp.
| void set_value_inv_mc | ( | const dvar_vector & | x, |
| const dvector & | v, | ||
| const int & | ii, | ||
| const double | fmin, | ||
| const double | fmax | ||
| ) |
Definition at line 135 of file mod_mc3.cpp.
| void set_value_mc | ( | const dvar_vector & | x, |
| const dvar_vector & | v, | ||
| const int & | ii, | ||
| const double | fmin, | ||
| const double | fmax | ||
| ) |
Definition at line 152 of file mod_mc3.cpp.
Referenced by param_init_bounded_vector::mc_scale(), param_init_bounded_matrix::mc_scale(), ndfboundp_mc(), param_init_bounded_vector::set_value(), param_init_bounded_dev_vector::set_value(), df1b2_init_bounded_vector::set_value(), and set_value_mc().
| double set_value_mc | ( | double | z, |
| double | min, | ||
| double | max | ||
| ) |
Definition at line 128 of file mod_mc3.cpp.
| void tracing_message | ( | int | _traceflag, |
| const char * | s, | ||
| int * | pn | ||
| ) |
| void tracing_message | ( | int | _traceflag, |
| const char * | s, | ||
| double * | pd | ||
| ) |
| dvector value | ( | const param_init_number_vector & | t | ) |
Definition at line 85 of file model47.cpp.
| dvector value | ( | const param_init_bounded_number_vector & | t | ) |
Definition at line 98 of file model47.cpp.
| int withinbound | ( | int | lb, |
| int | n, | ||
| int | ub | ||
| ) |
Definition at line 45 of file model.cpp.
Referenced by initial_params::add_random_vector(), check_for_params_on_bounds(), initial_params::copy_all_values(), initial_params::correct_for_dev_objects(), initial_params::get_jacobian_value(), get_param_names(), initial_params::montecarlo_scale(), initial_params::num_active_calc(), initial_params::nvarcalc(), initial_params::reset(), initial_df1b2params::reset(), initial_params::reset1(), initial_params::restore_all_values(), initial_params::save_all(), function_minimizer::sd_routine(), initial_params::set_all_simulation_bounds(), initial_df1b2params::set_index(), initial_params::stddev_curvscale(), initial_params::stddev_scale(), initial_df1b2params::stddev_scale(), initial_params::stddev_vscale(), initial_params::xinit(), and initial_params::xinit1().
| int AD_gaussflag |
Definition at line 27 of file model.cpp.
Referenced by dll_param_matrix::allocate(), dll_param_init_matrix::allocate(), dll_data_matrix::allocate(), dll_data_matrix::~dll_data_matrix(), dll_param_init_matrix::~dll_param_init_matrix(), and dll_param_matrix::~dll_param_matrix().
| int ADqd_flag |
| function_minimizer* pfm |
|
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